Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.03■□□□□ 0.8
CDH3P22223 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.03■□□□□ 0.8
CDH3P22223 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
CDH3P22223 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.03■□□□□ 0.8
CDH3P22223 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.03■□□□□ 0.8
CDH3P22223 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.03■□□□□ 0.8
CDH3P22223 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
CDH3P22223 OR10C1-204ENST00000622521 1039 ntBASIC20.03■□□□□ 0.8
CDH3P22223 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDH3P22223 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.02■□□□□ 0.8
CDH3P22223 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.02■□□□□ 0.8
CDH3P22223 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
CDH3P22223 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDH3P22223 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CDH3P22223 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CDH3P22223 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CDH3P22223 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CDH3P22223 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CDH3P22223 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.01■□□□□ 0.79
CDH3P22223 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.01■□□□□ 0.79
CDH3P22223 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 AL162412.1-201ENST00000567129 965 ntBASIC20.01■□□□□ 0.79
CDH3P22223 AC016405.3-201ENST00000607710 860 ntBASIC20.01■□□□□ 0.79
CDH3P22223 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.01■□□□□ 0.79
CDH3P22223 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CDH3P22223 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CDH3P22223 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.01■□□□□ 0.79
CDH3P22223 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDH3P22223 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDH3P22223 FBXW4P1-201ENST00000426721 2239 ntBASIC20■□□□□ 0.79
CDH3P22223 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CDH3P22223 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH3P22223 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CDH3P22223 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH3P22223 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH3P22223 AC091799.1-201ENST00000422823 811 ntBASIC20■□□□□ 0.79
CDH3P22223 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH3P22223 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH3P22223 GUSBP6-202ENST00000438529 1198 ntBASIC20■□□□□ 0.79
CDH3P22223 CDV3P1-201ENST00000471403 739 ntBASIC20■□□□□ 0.79
CDH3P22223 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20■□□□□ 0.79
CDH3P22223 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20■□□□□ 0.79
CDH3P22223 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH3P22223 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH3P22223 MKRN4P-201ENST00000444706 1521 ntBASIC20■□□□□ 0.79
CDH3P22223 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20■□□□□ 0.79
CDH3P22223 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20■□□□□ 0.79
CDH3P22223 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDH3P22223 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDH3P22223 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDH3P22223 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
CDH3P22223 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CDH3P22223 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.99■□□□□ 0.79
CDH3P22223 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CDH3P22223 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.99■□□□□ 0.79
CDH3P22223 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.99■□□□□ 0.79
CDH3P22223 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDH3P22223 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDH3P22223 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CDH3P22223 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CDH3P22223 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.99■□□□□ 0.79
CDH3P22223 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CDH3P22223 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH3P22223 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH3P22223 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDH3P22223 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms