Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CSB-PGBD3P0DP91 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CSB-PGBD3P0DP91 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CSB-PGBD3P0DP91 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
CSB-PGBD3P0DP91 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 AC113410.3-201ENST00000623366 203 ntBASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CSB-PGBD3P0DP91 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 AL390719.1-204ENST00000412397 1219 ntBASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 AC087499.1-201ENST00000418141 1075 ntBASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CSB-PGBD3P0DP91 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CSB-PGBD3P0DP91 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
CSB-PGBD3P0DP91 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 PGM5P4-201ENST00000421970 445 ntBASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 PRKY-204ENST00000533551 1019 ntBASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 C9orf163-202ENST00000624034 2573 ntBASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CSB-PGBD3P0DP91 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC27.31■■□□□ 1.96
CSB-PGBD3P0DP91 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 RER1-204ENST00000378518 522 ntTSL 3 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 CABP2-204ENST00000636477 941 ntTSL 5 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 MOK-233ENST00000524214 1539 ntTSL 2 BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CSB-PGBD3P0DP91 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CSB-PGBD3P0DP91 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms