Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
HLA-DQA1P01909 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 AP004607.7-201ENST00000527152 1677 ntBASIC15.41■□□□□ 0.06
HLA-DQA1P01909 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DQA1P01909 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 RARRES2P1-201ENST00000474487 481 ntBASIC15.4■□□□□ 0.06
HLA-DQA1P01909 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 AC120498.9-201ENST00000339021 3867 ntBASIC15.4■□□□□ 0.06
HLA-DQA1P01909 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HLA-DQA1P01909 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
HLA-DQA1P01909 AC020763.4-201ENST00000623414 4170 ntBASIC15.39■□□□□ 0.05
HLA-DQA1P01909 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 TK2-216ENST00000564917 1156 ntTSL 3 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC15.39■□□□□ 0.05
HLA-DQA1P01909 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms