Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.06■□□□□ 0.8
SIX3O95343 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX3O95343 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX3O95343 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX3O95343 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SIX3O95343 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.05■□□□□ 0.8
SIX3O95343 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.05■□□□□ 0.8
SIX3O95343 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.05■□□□□ 0.8
SIX3O95343 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.05■□□□□ 0.8
SIX3O95343 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.05■□□□□ 0.8
SIX3O95343 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX3O95343 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX3O95343 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
SIX3O95343 AL162377.1-201ENST00000618844 1793 ntBASIC20.05■□□□□ 0.8
SIX3O95343 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX3O95343 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.05■□□□□ 0.8
SIX3O95343 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
SIX3O95343 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX3O95343 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX3O95343 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX3O95343 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX3O95343 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SIX3O95343 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.04■□□□□ 0.8
SIX3O95343 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.04■□□□□ 0.8
SIX3O95343 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX3O95343 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SIX3O95343 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.04■□□□□ 0.8
SIX3O95343 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX3O95343 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
SIX3O95343 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.04■□□□□ 0.8
SIX3O95343 AFG3L1P-217ENST00000557444 2447 ntBASIC20.04■□□□□ 0.8
SIX3O95343 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX3O95343 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.03■□□□□ 0.8
SIX3O95343 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.03■□□□□ 0.8
SIX3O95343 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SIX3O95343 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.03■□□□□ 0.8
SIX3O95343 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX3O95343 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX3O95343 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX3O95343 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.02■□□□□ 0.8
SIX3O95343 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX3O95343 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.02■□□□□ 0.8
SIX3O95343 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX3O95343 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.02■□□□□ 0.8
SIX3O95343 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SIX3O95343 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX3O95343 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SIX3O95343 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX3O95343 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.02■□□□□ 0.8
SIX3O95343 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SIX3O95343 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX3O95343 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.02■□□□□ 0.79
SIX3O95343 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX3O95343 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX3O95343 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SIX3O95343 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX3O95343 AC116050.2-201ENST00000612102 1779 ntBASIC20.01■□□□□ 0.79
SIX3O95343 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX3O95343 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.01■□□□□ 0.79
SIX3O95343 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX3O95343 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX3O95343 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX3O95343 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.01■□□□□ 0.79
SIX3O95343 KRT18P61-201ENST00000585825 1298 ntBASIC20.01■□□□□ 0.79
SIX3O95343 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.01■□□□□ 0.79
SIX3O95343 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
SIX3O95343 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.01■□□□□ 0.79
SIX3O95343 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
SIX3O95343 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SIX3O95343 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SIX3O95343 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX3O95343 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SIX3O95343 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SIX3O95343 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms