Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PRPF40AO75400 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PRPF40AO75400 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
PRPF40AO75400 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PRPF40AO75400 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
PRPF40AO75400 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 AC055733.4-201ENST00000638462 1354 ntBASIC23.8■■□□□ 1.4
PRPF40AO75400 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
PRPF40AO75400 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.8■■□□□ 1.4
PRPF40AO75400 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.8■■□□□ 1.4
PRPF40AO75400 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.8■■□□□ 1.4
PRPF40AO75400 AC233992.3-201ENST00000607491 485 ntBASIC23.8■■□□□ 1.4
PRPF40AO75400 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.8■■□□□ 1.4
PRPF40AO75400 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PRPF40AO75400 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.8■■□□□ 1.4
PRPF40AO75400 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
PRPF40AO75400 SMG8-203ENST00000578922 2178 ntBASIC23.79■■□□□ 1.4
PRPF40AO75400 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PRPF40AO75400 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
PRPF40AO75400 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
PRPF40AO75400 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC23.79■■□□□ 1.4
PRPF40AO75400 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.79■■□□□ 1.4
PRPF40AO75400 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PRPF40AO75400 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.79■■□□□ 1.4
PRPF40AO75400 AC011484.1-201ENST00000377652 1995 ntBASIC23.79■■□□□ 1.4
PRPF40AO75400 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PRPF40AO75400 AL020996.1-203ENST00000536896 2307 ntBASIC23.79■■□□□ 1.4
PRPF40AO75400 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC23.79■■□□□ 1.4
PRPF40AO75400 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PRPF40AO75400 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23.79■■□□□ 1.4
PRPF40AO75400 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
PRPF40AO75400 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PRPF40AO75400 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
PRPF40AO75400 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
PRPF40AO75400 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
PRPF40AO75400 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC23.78■■□□□ 1.4
PRPF40AO75400 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PRPF40AO75400 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
PRPF40AO75400 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.78■■□□□ 1.4
PRPF40AO75400 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC23.78■■□□□ 1.4
PRPF40AO75400 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
PRPF40AO75400 AF213884.3-201ENST00000563833 479 ntBASIC23.78■■□□□ 1.4
PRPF40AO75400 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
PRPF40AO75400 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PRPF40AO75400 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
PRPF40AO75400 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC23.78■■□□□ 1.4
PRPF40AO75400 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
PRPF40AO75400 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.78■■□□□ 1.4
PRPF40AO75400 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.77■■□□□ 1.4
PRPF40AO75400 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC23.77■■□□□ 1.4
PRPF40AO75400 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
PRPF40AO75400 TCF3P1-201ENST00000423021 1937 ntBASIC23.77■■□□□ 1.4
PRPF40AO75400 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 AC027682.1-201ENST00000562846 899 ntBASIC23.77■■□□□ 1.4
PRPF40AO75400 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.77■■□□□ 1.4
PRPF40AO75400 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.77■■□□□ 1.4
PRPF40AO75400 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PRPF40AO75400 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.39
PRPF40AO75400 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PRPF40AO75400 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
PRPF40AO75400 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
PRPF40AO75400 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PRPF40AO75400 AC116562.4-201ENST00000641316 2276 ntBASIC23.76■■□□□ 1.39
PRPF40AO75400 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PRPF40AO75400 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.76■■□□□ 1.39
PRPF40AO75400 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PRPF40AO75400 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PRPF40AO75400 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PRPF40AO75400 AL136967.2-201ENST00000623968 743 ntBASIC23.76■■□□□ 1.39
PRPF40AO75400 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
PRPF40AO75400 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
PRPF40AO75400 AC009237.3-201ENST00000393279 1427 ntBASIC23.76■■□□□ 1.39
PRPF40AO75400 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.76■■□□□ 1.39
PRPF40AO75400 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.75■■□□□ 1.39
PRPF40AO75400 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC23.75■■□□□ 1.39
PRPF40AO75400 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
PRPF40AO75400 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.75■■□□□ 1.39
PRPF40AO75400 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.75■■□□□ 1.39
PRPF40AO75400 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC23.75■■□□□ 1.39
PRPF40AO75400 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PRPF40AO75400 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PRPF40AO75400 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms