Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PTCD1O75127 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC26.47■■□□□ 1.83
PTCD1O75127 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTCD1O75127 MDFI-202ENST00000373050 809 ntTSL 2 BASIC26.47■■□□□ 1.83
PTCD1O75127 REXO2-216ENST00000544196 452 ntTSL 3 BASIC26.47■■□□□ 1.83
PTCD1O75127 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC26.47■■□□□ 1.83
PTCD1O75127 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC26.47■■□□□ 1.83
PTCD1O75127 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTCD1O75127 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC26.47■■□□□ 1.83
PTCD1O75127 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 MFF-203ENST00000349901 1716 ntTSL 2 BASIC26.46■■□□□ 1.83
PTCD1O75127 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
PTCD1O75127 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 GGT1-206ENST00000404223 952 ntTSL 2 BASIC26.46■■□□□ 1.83
PTCD1O75127 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
PTCD1O75127 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 LY6E-205ENST00000519611 635 ntTSL 3 BASIC26.46■■□□□ 1.83
PTCD1O75127 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC26.46■■□□□ 1.83
PTCD1O75127 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC26.46■■□□□ 1.83
PTCD1O75127 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
PTCD1O75127 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
PTCD1O75127 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC26.46■■□□□ 1.83
PTCD1O75127 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PTCD1O75127 AC242852.2-201ENST00000615738 1807 ntBASIC26.46■■□□□ 1.83
PTCD1O75127 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.83
PTCD1O75127 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC26.45■■□□□ 1.83
PTCD1O75127 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
PTCD1O75127 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.82
PTCD1O75127 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
PTCD1O75127 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC26.45■■□□□ 1.82
PTCD1O75127 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC26.45■■□□□ 1.82
PTCD1O75127 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC26.45■■□□□ 1.82
PTCD1O75127 AC120498.8-201ENST00000614275 531 ntBASIC26.45■■□□□ 1.82
PTCD1O75127 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC26.45■■□□□ 1.82
PTCD1O75127 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC26.45■■□□□ 1.82
PTCD1O75127 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
PTCD1O75127 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC26.44■■□□□ 1.82
PTCD1O75127 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC26.44■■□□□ 1.82
PTCD1O75127 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 SERF2-207ENST00000409614 582 ntTSL 2 BASIC26.44■■□□□ 1.82
PTCD1O75127 AC211429.1-201ENST00000415277 523 ntBASIC26.44■■□□□ 1.82
PTCD1O75127 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC26.44■■□□□ 1.82
PTCD1O75127 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 AC124016.1-201ENST00000609552 612 ntBASIC26.44■■□□□ 1.82
PTCD1O75127 REXO1L12P-201ENST00000622156 912 ntBASIC26.44■■□□□ 1.82
PTCD1O75127 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
PTCD1O75127 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTCD1O75127 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC26.44■■□□□ 1.82
PTCD1O75127 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC26.44■■□□□ 1.82
PTCD1O75127 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD1O75127 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD1O75127 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD1O75127 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD1O75127 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC26.43■■□□□ 1.82
PTCD1O75127 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD1O75127 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD1O75127 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC26.43■■□□□ 1.82
PTCD1O75127 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PTCD1O75127 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
PTCD1O75127 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC26.42■■□□□ 1.82
PTCD1O75127 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC26.42■■□□□ 1.82
PTCD1O75127 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC26.42■■□□□ 1.82
PTCD1O75127 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC26.42■■□□□ 1.82
PTCD1O75127 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
PTCD1O75127 RPS2P55-201ENST00000397318 883 ntBASIC26.42■■□□□ 1.82
PTCD1O75127 TSPY7P-201ENST00000431358 1114 ntBASIC26.42■■□□□ 1.82
PTCD1O75127 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 AC107956.1-201ENST00000494359 873 ntBASIC26.42■■□□□ 1.82
PTCD1O75127 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC26.42■■□□□ 1.82
PTCD1O75127 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC26.42■■□□□ 1.82
PTCD1O75127 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC26.42■■□□□ 1.82
PTCD1O75127 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTCD1O75127 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC26.42■■□□□ 1.82
PTCD1O75127 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD1O75127 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC26.41■■□□□ 1.82
PTCD1O75127 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC26.41■■□□□ 1.82
PTCD1O75127 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC26.41■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms