Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
SHOX2O60902 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SHOX2O60902 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHOX2O60902 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SHOX2O60902 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.59■□□□□ 0.89
SHOX2O60902 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SHOX2O60902 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.59■□□□□ 0.89
SHOX2O60902 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 MIR4508-201ENST00000584178 70 ntBASIC20.59■□□□□ 0.89
SHOX2O60902 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.59■□□□□ 0.89
SHOX2O60902 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SHOX2O60902 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHOX2O60902 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.58■□□□□ 0.89
SHOX2O60902 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SHOX2O60902 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.58■□□□□ 0.89
SHOX2O60902 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHOX2O60902 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SHOX2O60902 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHOX2O60902 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHOX2O60902 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.58■□□□□ 0.89
SHOX2O60902 AC068587.7-201ENST00000641602 218 ntBASIC20.58■□□□□ 0.89
SHOX2O60902 TREX1-205ENST00000625293 1783 ntBASIC20.58■□□□□ 0.89
SHOX2O60902 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
SHOX2O60902 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHOX2O60902 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SHOX2O60902 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.57■□□□□ 0.88
SHOX2O60902 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.57■□□□□ 0.88
SHOX2O60902 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
SHOX2O60902 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.57■□□□□ 0.88
SHOX2O60902 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
SHOX2O60902 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.57■□□□□ 0.88
SHOX2O60902 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.57■□□□□ 0.88
SHOX2O60902 AC012354.3-201ENST00000623734 483 ntBASIC20.57■□□□□ 0.88
SHOX2O60902 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHOX2O60902 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
SHOX2O60902 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SHOX2O60902 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 AC103724.3-201ENST00000564481 992 ntBASIC20.56■□□□□ 0.88
SHOX2O60902 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
SHOX2O60902 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SHOX2O60902 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.56■□□□□ 0.88
SHOX2O60902 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 AC020916.1-201ENST00000587762 1774 ntBASIC20.56■□□□□ 0.88
SHOX2O60902 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.56■□□□□ 0.88
SHOX2O60902 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.56■□□□□ 0.88
SHOX2O60902 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHOX2O60902 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHOX2O60902 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHOX2O60902 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.55■□□□□ 0.88
SHOX2O60902 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHOX2O60902 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.55■□□□□ 0.88
SHOX2O60902 TMEM179-206ENST00000616017 1645 ntBASIC20.55■□□□□ 0.88
SHOX2O60902 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms