Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.83■□□□□ 0.93
RIPK2O43353 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.83■□□□□ 0.93
RIPK2O43353 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
RIPK2O43353 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
RIPK2O43353 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 MIR4767-201ENST00000582827 78 ntBASIC20.83■□□□□ 0.93
RIPK2O43353 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RIPK2O43353 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
RIPK2O43353 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RIPK2O43353 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RIPK2O43353 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.83■□□□□ 0.92
RIPK2O43353 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.83■□□□□ 0.92
RIPK2O43353 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RIPK2O43353 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.92
RIPK2O43353 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RIPK2O43353 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.82■□□□□ 0.92
RIPK2O43353 AL158211.5-201ENST00000623583 2518 ntBASIC20.82■□□□□ 0.92
RIPK2O43353 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RIPK2O43353 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.82■□□□□ 0.92
RIPK2O43353 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.82■□□□□ 0.92
RIPK2O43353 AC126544.1-201ENST00000580842 1059 ntBASIC20.82■□□□□ 0.92
RIPK2O43353 AC053503.5-201ENST00000601508 636 ntBASIC20.82■□□□□ 0.92
RIPK2O43353 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 BX323043.1-201ENST00000641006 1765 ntBASIC20.82■□□□□ 0.92
RIPK2O43353 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RIPK2O43353 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.81■□□□□ 0.92
RIPK2O43353 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RIPK2O43353 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
RIPK2O43353 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RIPK2O43353 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.81■□□□□ 0.92
RIPK2O43353 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.81■□□□□ 0.92
RIPK2O43353 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
RIPK2O43353 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.81■□□□□ 0.92
RIPK2O43353 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
RIPK2O43353 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RIPK2O43353 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.81■□□□□ 0.92
RIPK2O43353 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.8■□□□□ 0.92
RIPK2O43353 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK2O43353 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 AC098818.2-201ENST00000564925 2320 ntBASIC20.8■□□□□ 0.92
RIPK2O43353 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.8■□□□□ 0.92
RIPK2O43353 AC131281.2-201ENST00000520478 145 ntBASIC20.8■□□□□ 0.92
RIPK2O43353 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 AC105233.4-201ENST00000642045 216 ntBASIC20.8■□□□□ 0.92
RIPK2O43353 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RIPK2O43353 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
RIPK2O43353 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RIPK2O43353 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.79■□□□□ 0.92
RIPK2O43353 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.79■□□□□ 0.92
RIPK2O43353 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.79■□□□□ 0.92
RIPK2O43353 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
RIPK2O43353 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.79■□□□□ 0.92
RIPK2O43353 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
RIPK2O43353 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.79■□□□□ 0.92
RIPK2O43353 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms