Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC3O15379 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC3O15379 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
HDAC3O15379 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.94■□□□□ 0.78
HDAC3O15379 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 AC008764.7-201ENST00000593779 1081 ntBASIC19.94■□□□□ 0.78
HDAC3O15379 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.94■□□□□ 0.78
HDAC3O15379 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
HDAC3O15379 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HDAC3O15379 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC3O15379 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC3O15379 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC3O15379 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.93■□□□□ 0.78
HDAC3O15379 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
HDAC3O15379 SMG8-203ENST00000578922 2178 ntBASIC19.93■□□□□ 0.78
HDAC3O15379 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
HDAC3O15379 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.93■□□□□ 0.78
HDAC3O15379 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC3O15379 AC135279.3-201ENST00000610945 1311 ntBASIC19.93■□□□□ 0.78
HDAC3O15379 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.93■□□□□ 0.78
HDAC3O15379 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC3O15379 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.93■□□□□ 0.78
HDAC3O15379 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC3O15379 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.93■□□□□ 0.78
HDAC3O15379 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC3O15379 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.93■□□□□ 0.78
HDAC3O15379 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HDAC3O15379 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.92■□□□□ 0.78
HDAC3O15379 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.92■□□□□ 0.78
HDAC3O15379 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.92■□□□□ 0.78
HDAC3O15379 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
HDAC3O15379 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
HDAC3O15379 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.92■□□□□ 0.78
HDAC3O15379 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HDAC3O15379 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.92■□□□□ 0.78
HDAC3O15379 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
HDAC3O15379 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.91■□□□□ 0.78
HDAC3O15379 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.91■□□□□ 0.78
HDAC3O15379 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 AC099791.1-201ENST00000416440 715 ntBASIC19.91■□□□□ 0.78
HDAC3O15379 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HDAC3O15379 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.91■□□□□ 0.78
HDAC3O15379 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.91■□□□□ 0.78
HDAC3O15379 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.91■□□□□ 0.78
HDAC3O15379 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.91■□□□□ 0.78
HDAC3O15379 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.91■□□□□ 0.78
HDAC3O15379 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDAC3O15379 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.91■□□□□ 0.78
HDAC3O15379 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC3O15379 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HDAC3O15379 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.9■□□□□ 0.78
HDAC3O15379 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
HDAC3O15379 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC3O15379 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC3O15379 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HDAC3O15379 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.9■□□□□ 0.78
HDAC3O15379 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.9■□□□□ 0.78
HDAC3O15379 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.9■□□□□ 0.78
HDAC3O15379 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.9■□□□□ 0.78
HDAC3O15379 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.9■□□□□ 0.78
HDAC3O15379 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC3O15379 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.9■□□□□ 0.78
HDAC3O15379 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC3O15379 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HDAC3O15379 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
HDAC3O15379 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.9■□□□□ 0.78
HDAC3O15379 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
HDAC3O15379 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
HDAC3O15379 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.9■□□□□ 0.78
HDAC3O15379 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
HDAC3O15379 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms