Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SDCBPO00560 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.41■□□□□ 0.38
SDCBPO00560 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.41■□□□□ 0.38
SDCBPO00560 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.41■□□□□ 0.38
SDCBPO00560 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.41■□□□□ 0.38
SDCBPO00560 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
SDCBPO00560 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SDCBPO00560 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
SDCBPO00560 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SDCBPO00560 FP700111.2-201ENST00000619190 1892 ntBASIC17.41■□□□□ 0.38
SDCBPO00560 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SDCBPO00560 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SDCBPO00560 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SDCBPO00560 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDCBPO00560 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.4■□□□□ 0.38
SDCBPO00560 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.4■□□□□ 0.38
SDCBPO00560 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.4■□□□□ 0.38
SDCBPO00560 AL358852.1-201ENST00000623174 1268 ntBASIC17.4■□□□□ 0.38
SDCBPO00560 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SDCBPO00560 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.4■□□□□ 0.38
SDCBPO00560 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.4■□□□□ 0.38
SDCBPO00560 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 AL512408.1-201ENST00000569378 2000 ntBASIC17.4■□□□□ 0.38
SDCBPO00560 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.4■□□□□ 0.38
SDCBPO00560 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.4■□□□□ 0.38
SDCBPO00560 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDCBPO00560 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SDCBPO00560 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SDCBPO00560 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.39■□□□□ 0.38
SDCBPO00560 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SDCBPO00560 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SDCBPO00560 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.39■□□□□ 0.37
SDCBPO00560 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SDCBPO00560 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.39■□□□□ 0.37
SDCBPO00560 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SDCBPO00560 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.39■□□□□ 0.37
SDCBPO00560 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.39■□□□□ 0.37
SDCBPO00560 AC105265.2-201ENST00000467189 838 ntBASIC17.39■□□□□ 0.37
SDCBPO00560 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC17.39■□□□□ 0.37
SDCBPO00560 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SDCBPO00560 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.39■□□□□ 0.37
SDCBPO00560 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SDCBPO00560 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SDCBPO00560 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SDCBPO00560 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.39■□□□□ 0.37
SDCBPO00560 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SDCBPO00560 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 MIR638-201ENST00000385237 100 ntBASIC17.38■□□□□ 0.37
SDCBPO00560 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.38■□□□□ 0.37
SDCBPO00560 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.38■□□□□ 0.37
SDCBPO00560 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
SDCBPO00560 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SDCBPO00560 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SDCBPO00560 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SDCBPO00560 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.37■□□□□ 0.37
SDCBPO00560 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms