Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 AC092720.2-201ENST00000602388 1665 ntBASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM49D1C9J1S8 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 AC131212.1-201ENST00000613771 668 ntBASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM49D1C9J1S8 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 RASA4CP-201ENST00000424092 1398 ntBASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 AC012414.1-201ENST00000556676 535 ntBASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 AC106739.1-201ENST00000617035 715 ntBASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM49D1C9J1S8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.52■□□□□ 0.87
TRIM49D1C9J1S8 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 EDA-201ENST00000338901 1233 ntBASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 AC008175.2-201ENST00000612840 297 ntBASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
TRIM49D1C9J1S8 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 AF213884.3-201ENST00000563833 479 ntBASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 TPRG1LP1-201ENST00000598702 760 ntBASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms