Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC22.12■■□□□ 1.13
LRRC53A6NM62 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC22.12■■□□□ 1.13
LRRC53A6NM62 AC120498.10-201ENST00000621827 505 ntBASIC22.12■■□□□ 1.13
LRRC53A6NM62 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
LRRC53A6NM62 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRRC53A6NM62 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRRC53A6NM62 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
LRRC53A6NM62 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRRC53A6NM62 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRRC53A6NM62 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
LRRC53A6NM62 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LRRC53A6NM62 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
LRRC53A6NM62 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LRRC53A6NM62 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
LRRC53A6NM62 DUX4L2-201ENST00000561772 1275 ntBASIC22.11■■□□□ 1.13
LRRC53A6NM62 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 DUX4L6-201ENST00000626483 1275 ntBASIC22.11■■□□□ 1.13
LRRC53A6NM62 DUX4L1-201ENST00000627662 1275 ntBASIC22.11■■□□□ 1.13
LRRC53A6NM62 DUX4L8-201ENST00000629013 1275 ntBASIC22.11■■□□□ 1.13
LRRC53A6NM62 DUX4L3-201ENST00000630187 1275 ntBASIC22.11■■□□□ 1.13
LRRC53A6NM62 DUX4L7-201ENST00000630678 1275 ntBASIC22.11■■□□□ 1.13
LRRC53A6NM62 DUX4L5-201ENST00000630834 1275 ntBASIC22.11■■□□□ 1.13
LRRC53A6NM62 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LRRC53A6NM62 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
LRRC53A6NM62 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
LRRC53A6NM62 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
LRRC53A6NM62 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LRRC53A6NM62 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
LRRC53A6NM62 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LRRC53A6NM62 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
LRRC53A6NM62 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
LRRC53A6NM62 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
LRRC53A6NM62 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
LRRC53A6NM62 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
LRRC53A6NM62 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC22.1■■□□□ 1.13
LRRC53A6NM62 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
LRRC53A6NM62 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.1■■□□□ 1.13
LRRC53A6NM62 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LRRC53A6NM62 JTB-203ENST00000368589 1216 ntTSL 2 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 MIR638-201ENST00000385237 100 ntBASIC22.09■■□□□ 1.13
LRRC53A6NM62 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 AP001160.3-201ENST00000601484 763 ntBASIC22.09■■□□□ 1.13
LRRC53A6NM62 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LRRC53A6NM62 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LRRC53A6NM62 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LRRC53A6NM62 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LRRC53A6NM62 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
LRRC53A6NM62 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LRRC53A6NM62 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LRRC53A6NM62 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LRRC53A6NM62 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.08■■□□□ 1.13
LRRC53A6NM62 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC22.08■■□□□ 1.13
LRRC53A6NM62 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LRRC53A6NM62 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
LRRC53A6NM62 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
LRRC53A6NM62 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC22.08■■□□□ 1.13
LRRC53A6NM62 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
LRRC53A6NM62 AC116050.2-201ENST00000612102 1779 ntBASIC22.08■■□□□ 1.13
LRRC53A6NM62 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LRRC53A6NM62 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
LRRC53A6NM62 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.08■■□□□ 1.13
LRRC53A6NM62 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LRRC53A6NM62 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
LRRC53A6NM62 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LRRC53A6NM62 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
LRRC53A6NM62 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.08■■□□□ 1.12
LRRC53A6NM62 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
LRRC53A6NM62 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
LRRC53A6NM62 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
LRRC53A6NM62 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
LRRC53A6NM62 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
LRRC53A6NM62 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
LRRC53A6NM62 TERF1P2-201ENST00000583350 1212 ntBASIC22.07■■□□□ 1.12
LRRC53A6NM62 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC22.07■■□□□ 1.12
LRRC53A6NM62 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
LRRC53A6NM62 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
LRRC53A6NM62 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
LRRC53A6NM62 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
LRRC53A6NM62 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.07■■□□□ 1.12
LRRC53A6NM62 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
LRRC53A6NM62 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms