Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC23.64■■□□□ 1.38
PCDHA1Q9Y5I3 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PCDHA1Q9Y5I3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
PCDHA1Q9Y5I3 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
PCDHA1Q9Y5I3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
PCDHA1Q9Y5I3 AF106564.1-201ENST00000607058 2553 ntBASIC23.64■■□□□ 1.38
PCDHA1Q9Y5I3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PCDHA1Q9Y5I3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PCDHA1Q9Y5I3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 AC083880.1-201ENST00000608266 535 ntBASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 AL589743.5-201ENST00000616611 1050 ntBASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 AC026310.3-201ENST00000625186 2373 ntBASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.64■■□□□ 1.37
PCDHA1Q9Y5I3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.63■■□□□ 1.37
PCDHA1Q9Y5I3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
PCDHA1Q9Y5I3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA1Q9Y5I3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA1Q9Y5I3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA1Q9Y5I3 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA1Q9Y5I3 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.61■■□□□ 1.37
PCDHA1Q9Y5I3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.61■■□□□ 1.37
PCDHA1Q9Y5I3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
PCDHA1Q9Y5I3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PCDHA1Q9Y5I3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 AC087633.2-202ENST00000565166 1439 ntBASIC23.59■■□□□ 1.37
PCDHA1Q9Y5I3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 AC121338.2-201ENST00000622535 1744 ntBASIC23.58■■□□□ 1.37
PCDHA1Q9Y5I3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms