Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.83■□□□□ 0.77
PCDHGA1Q9Y5H4 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA1Q9Y5H4 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA1Q9Y5H4 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA1Q9Y5H4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA1Q9Y5H4 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
PCDHGA1Q9Y5H4 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCDHGA1Q9Y5H4 AC116050.2-201ENST00000612102 1779 ntBASIC19.83■□□□□ 0.76
PCDHGA1Q9Y5H4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 KRT18P21-201ENST00000515767 1272 ntBASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 AC120498.8-201ENST00000614275 531 ntBASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 AL023875.1-201ENST00000640777 796 ntBASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PCDHGA1Q9Y5H4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.81■□□□□ 0.76
PCDHGA1Q9Y5H4 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 RARRES2P10-201ENST00000564312 460 ntBASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 AC005829.2-201ENST00000571422 1056 ntBASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.8■□□□□ 0.76
PCDHGA1Q9Y5H4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms