Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 AC007225.1-201ENST00000566331 1836 ntBASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 DUX4L16-201ENST00000555130 1264 ntBASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 FP700111.2-201ENST00000619190 1892 ntBASIC21.35■■□□□ 1.01
AP4E1Q9UPM8 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 AC027702.1-201ENST00000563810 1770 ntBASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 CDV3P1-201ENST00000471403 739 ntBASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 IKBKGP1-201ENST00000612193 1073 ntBASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 AC092437.1-201ENST00000624794 1048 ntBASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
AP4E1Q9UPM8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
AP4E1Q9UPM8 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
AP4E1Q9UPM8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
AP4E1Q9UPM8 AC007322.4-201ENST00000509611 723 ntBASIC21.33■■□□□ 1.01
AP4E1Q9UPM8 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.33■■□□□ 1.01
AP4E1Q9UPM8 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
AP4E1Q9UPM8 AL591742.1-201ENST00000604433 565 ntBASIC21.33■■□□□ 1.01
AP4E1Q9UPM8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.33■■□□□ 1.01
AP4E1Q9UPM8 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.33■■□□□ 1
AP4E1Q9UPM8 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.33■■□□□ 1
AP4E1Q9UPM8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
AP4E1Q9UPM8 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.33■■□□□ 1
AP4E1Q9UPM8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
AP4E1Q9UPM8 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
AP4E1Q9UPM8 AL157384.1-201ENST00000445995 2473 ntBASIC21.32■■□□□ 1
AP4E1Q9UPM8 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.32■■□□□ 1
AP4E1Q9UPM8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
AP4E1Q9UPM8 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.32■■□□□ 1
AP4E1Q9UPM8 CNN2P6-201ENST00000439038 900 ntBASIC21.32■■□□□ 1
AP4E1Q9UPM8 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.32■■□□□ 1
AP4E1Q9UPM8 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.32■■□□□ 1
AP4E1Q9UPM8 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.32■■□□□ 1
AP4E1Q9UPM8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
AP4E1Q9UPM8 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.31■■□□□ 1
AP4E1Q9UPM8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
AP4E1Q9UPM8 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
AP4E1Q9UPM8 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 FEM1AP1-201ENST00000431297 1995 ntBASIC21.3■■□□□ 1
AP4E1Q9UPM8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
AP4E1Q9UPM8 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
AP4E1Q9UPM8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.3■■□□□ 1
AP4E1Q9UPM8 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms