Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC005224.4-201ENST00000583262 1652 ntBASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.63■■□□□ 1.05
SMARCAL1Q9NZC9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 AC008764.7-201ENST00000593779 1081 ntBASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 AC233992.3-201ENST00000607491 485 ntBASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SMARCAL1Q9NZC9 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 IGHV3-19-201ENST00000521488 291 ntBASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 AC126544.1-201ENST00000580842 1059 ntBASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 AC061975.6-201ENST00000579045 1553 ntBASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCAL1Q9NZC9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 AC011484.1-201ENST00000377652 1995 ntBASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 EDA-201ENST00000338901 1233 ntBASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMARCAL1Q9NZC9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 AL355001.2-201ENST00000620617 1191 ntBASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 TCF3P1-201ENST00000423021 1937 ntBASIC21.59■■□□□ 1.05
SMARCAL1Q9NZC9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
SMARCAL1Q9NZC9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCAL1Q9NZC9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCAL1Q9NZC9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCAL1Q9NZC9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.58■■□□□ 1.04
SMARCAL1Q9NZC9 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCAL1Q9NZC9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SMARCAL1Q9NZC9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.57■■□□□ 1.04
SMARCAL1Q9NZC9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms