Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TDP1Q9NUW8 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 AL359736.2-201ENST00000621992 437 ntBASIC21.25■□□□□ 0.99
TDP1Q9NUW8 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.25■□□□□ 0.99
TDP1Q9NUW8 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 RPS2P4-201ENST00000476944 856 ntBASIC21.24■□□□□ 0.99
TDP1Q9NUW8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TDP1Q9NUW8 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 UBE2SP1-201ENST00000450587 669 ntBASIC21.23■□□□□ 0.99
TDP1Q9NUW8 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
TDP1Q9NUW8 AC133561.1-201ENST00000568600 2415 ntBASIC21.23■□□□□ 0.99
TDP1Q9NUW8 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TDP1Q9NUW8 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.21■□□□□ 0.99
TDP1Q9NUW8 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 RPPH1-201ENST00000516869 333 ntBASIC21.21■□□□□ 0.99
TDP1Q9NUW8 C1QBPP2-201ENST00000528754 825 ntBASIC21.21■□□□□ 0.99
TDP1Q9NUW8 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 RN7SL471P-201ENST00000580476 299 ntBASIC21.21■□□□□ 0.99
TDP1Q9NUW8 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.21■□□□□ 0.99
TDP1Q9NUW8 AL356652.1-201ENST00000615962 565 ntBASIC21.21■□□□□ 0.99
TDP1Q9NUW8 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.21■□□□□ 0.99
TDP1Q9NUW8 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms