Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 AP004607.7-201ENST00000527152 1677 ntBASIC18.71■□□□□ 0.59
DDX28Q9NUL7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 IGHV3-19-201ENST00000521488 291 ntBASIC18.71■□□□□ 0.59
DDX28Q9NUL7 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 AC104564.3-201ENST00000582367 638 ntBASIC18.71■□□□□ 0.59
DDX28Q9NUL7 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.71■□□□□ 0.59
DDX28Q9NUL7 Z98882.1-201ENST00000622160 2253 ntBASIC18.71■□□□□ 0.59
DDX28Q9NUL7 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
DDX28Q9NUL7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.7■□□□□ 0.58
DDX28Q9NUL7 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 AC126544.1-201ENST00000580842 1059 ntBASIC18.69■□□□□ 0.58
DDX28Q9NUL7 SMUG1P1-201ENST00000590640 811 ntBASIC18.69■□□□□ 0.58
DDX28Q9NUL7 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
DDX28Q9NUL7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 AC027682.1-201ENST00000562846 899 ntBASIC18.68■□□□□ 0.58
DDX28Q9NUL7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms