Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
LIME1Q9H400 AP003097.1-201ENST00000530657 1135 ntBASIC18.06■□□□□ 0.48
LIME1Q9H400 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.06■□□□□ 0.48
LIME1Q9H400 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.06■□□□□ 0.48
LIME1Q9H400 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.06■□□□□ 0.48
LIME1Q9H400 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIME1Q9H400 AF106564.1-201ENST00000607058 2553 ntBASIC18.06■□□□□ 0.48
LIME1Q9H400 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.06■□□□□ 0.48
LIME1Q9H400 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIME1Q9H400 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.06■□□□□ 0.48
LIME1Q9H400 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.06■□□□□ 0.48
LIME1Q9H400 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIME1Q9H400 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.05■□□□□ 0.48
LIME1Q9H400 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
LIME1Q9H400 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
LIME1Q9H400 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LIME1Q9H400 AL591742.1-201ENST00000604433 565 ntBASIC18.05■□□□□ 0.48
LIME1Q9H400 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.05■□□□□ 0.48
LIME1Q9H400 AC120498.10-201ENST00000621827 505 ntBASIC18.05■□□□□ 0.48
LIME1Q9H400 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
LIME1Q9H400 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
LIME1Q9H400 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.05■□□□□ 0.48
LIME1Q9H400 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
LIME1Q9H400 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIME1Q9H400 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LIME1Q9H400 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
LIME1Q9H400 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.04■□□□□ 0.48
LIME1Q9H400 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.04■□□□□ 0.48
LIME1Q9H400 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 Z98882.1-201ENST00000622160 2253 ntBASIC18.04■□□□□ 0.48
LIME1Q9H400 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.04■□□□□ 0.48
LIME1Q9H400 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.04■□□□□ 0.48
LIME1Q9H400 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.04■□□□□ 0.48
LIME1Q9H400 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.04■□□□□ 0.48
LIME1Q9H400 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.04■□□□□ 0.48
LIME1Q9H400 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.04■□□□□ 0.48
LIME1Q9H400 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 AC008175.2-201ENST00000612840 297 ntBASIC18.04■□□□□ 0.48
LIME1Q9H400 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.04■□□□□ 0.48
LIME1Q9H400 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LIME1Q9H400 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIME1Q9H400 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.04■□□□□ 0.48
LIME1Q9H400 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
LIME1Q9H400 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LIME1Q9H400 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
LIME1Q9H400 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.03■□□□□ 0.48
LIME1Q9H400 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.03■□□□□ 0.48
LIME1Q9H400 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.03■□□□□ 0.48
LIME1Q9H400 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.03■□□□□ 0.48
LIME1Q9H400 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.03■□□□□ 0.48
LIME1Q9H400 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 AC073130.3-201ENST00000624389 2278 ntBASIC18.03■□□□□ 0.48
LIME1Q9H400 RBM17P2-201ENST00000616397 1405 ntBASIC18.03■□□□□ 0.48
LIME1Q9H400 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIME1Q9H400 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
LIME1Q9H400 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.02■□□□□ 0.48
LIME1Q9H400 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.02■□□□□ 0.48
LIME1Q9H400 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.02■□□□□ 0.48
LIME1Q9H400 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.02■□□□□ 0.48
LIME1Q9H400 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIME1Q9H400 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIME1Q9H400 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIME1Q9H400 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIME1Q9H400 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LIME1Q9H400 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.02■□□□□ 0.48
LIME1Q9H400 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.02■□□□□ 0.48
LIME1Q9H400 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.02■□□□□ 0.48
LIME1Q9H400 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.02■□□□□ 0.48
LIME1Q9H400 AL034346.1-201ENST00000568244 1277 ntBASIC18.02■□□□□ 0.48
LIME1Q9H400 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.02■□□□□ 0.48
LIME1Q9H400 AL359736.2-201ENST00000621992 437 ntBASIC18.02■□□□□ 0.48
LIME1Q9H400 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIME1Q9H400 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LIME1Q9H400 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LIME1Q9H400 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIME1Q9H400 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms