Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 KRT17P1-201ENST00000399211 1546 ntBASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 AC087633.2-202ENST00000565166 1439 ntBASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 AC069152.1-201ENST00000438030 544 ntBASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 AC098934.4-201ENST00000564127 592 ntBASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 AC027702.1-201ENST00000563810 1770 ntBASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 AC005229.4-201ENST00000610085 2198 ntBASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 PLK5-205ENST00000642079 1969 ntBASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.63■□□□□ 0.89
ECHDC3Q96DC8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 KRT18P68-201ENST00000392293 1000 ntBASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ECHDC3Q96DC8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 AC133041.1-202ENST00000642053 222 ntBASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ECHDC3Q96DC8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 AL589743.5-201ENST00000616611 1050 ntBASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ECHDC3Q96DC8 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
ECHDC3Q96DC8 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ECHDC3Q96DC8 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ECHDC3Q96DC8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
ECHDC3Q96DC8 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.59■□□□□ 0.89
ECHDC3Q96DC8 MYC-209ENST00000641252 345 ntBASIC20.59■□□□□ 0.89
ECHDC3Q96DC8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
ECHDC3Q96DC8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
ECHDC3Q96DC8 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 LSM12P1-201ENST00000411836 588 ntBASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 AC105020.6-201ENST00000621523 1217 ntBASIC20.58■□□□□ 0.89
ECHDC3Q96DC8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms