Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
RTF1Q92541 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
RTF1Q92541 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
RTF1Q92541 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
RTF1Q92541 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
RTF1Q92541 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
RTF1Q92541 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
RTF1Q92541 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
RTF1Q92541 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.9■■□□□ 1.9
RTF1Q92541 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC26.9■■□□□ 1.9
RTF1Q92541 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC26.9■■□□□ 1.9
RTF1Q92541 AC105020.6-201ENST00000621523 1217 ntBASIC26.9■■□□□ 1.9
RTF1Q92541 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
RTF1Q92541 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC26.89■■□□□ 1.9
RTF1Q92541 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC26.89■■□□□ 1.9
RTF1Q92541 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC26.89■■□□□ 1.9
RTF1Q92541 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
RTF1Q92541 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
RTF1Q92541 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.9
RTF1Q92541 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC26.89■■□□□ 1.9
RTF1Q92541 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
RTF1Q92541 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
RTF1Q92541 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC26.89■■□□□ 1.9
RTF1Q92541 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
RTF1Q92541 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
RTF1Q92541 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC26.89■■□□□ 1.89
RTF1Q92541 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
RTF1Q92541 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
RTF1Q92541 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
RTF1Q92541 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.88■■□□□ 1.89
RTF1Q92541 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC26.88■■□□□ 1.89
RTF1Q92541 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC26.88■■□□□ 1.89
RTF1Q92541 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
RTF1Q92541 NXN-202ENST00000537628 1340 ntTSL 3 BASIC26.88■■□□□ 1.89
RTF1Q92541 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC26.88■■□□□ 1.89
RTF1Q92541 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
RTF1Q92541 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC26.87■■□□□ 1.89
RTF1Q92541 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC26.87■■□□□ 1.89
RTF1Q92541 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC26.87■■□□□ 1.89
RTF1Q92541 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC26.87■■□□□ 1.89
RTF1Q92541 GAS7-202ENST00000396115 929 ntTSL 5 BASIC26.87■■□□□ 1.89
RTF1Q92541 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC26.87■■□□□ 1.89
RTF1Q92541 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC26.87■■□□□ 1.89
RTF1Q92541 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC26.87■■□□□ 1.89
RTF1Q92541 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
RTF1Q92541 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 AC087633.2-202ENST00000565166 1439 ntBASIC26.87■■□□□ 1.89
RTF1Q92541 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.87■■□□□ 1.89
RTF1Q92541 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC26.87■■□□□ 1.89
RTF1Q92541 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
RTF1Q92541 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC26.87■■□□□ 1.89
RTF1Q92541 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC26.87■■□□□ 1.89
RTF1Q92541 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC26.86■■□□□ 1.89
RTF1Q92541 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
RTF1Q92541 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
RTF1Q92541 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC26.86■■□□□ 1.89
RTF1Q92541 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC26.86■■□□□ 1.89
RTF1Q92541 PGM5P4-201ENST00000421970 445 ntBASIC26.86■■□□□ 1.89
RTF1Q92541 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC26.86■■□□□ 1.89
RTF1Q92541 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC26.86■■□□□ 1.89
RTF1Q92541 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC26.86■■□□□ 1.89
RTF1Q92541 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC26.86■■□□□ 1.89
RTF1Q92541 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
RTF1Q92541 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
RTF1Q92541 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
RTF1Q92541 AL024507.2-201ENST00000606070 2574 ntBASIC26.86■■□□□ 1.89
RTF1Q92541 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
RTF1Q92541 AC011484.1-201ENST00000377652 1995 ntBASIC26.86■■□□□ 1.89
RTF1Q92541 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC26.86■■□□□ 1.89
RTF1Q92541 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
RTF1Q92541 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC26.85■■□□□ 1.89
RTF1Q92541 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
RTF1Q92541 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
RTF1Q92541 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
RTF1Q92541 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
RTF1Q92541 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC26.84■■□□□ 1.89
RTF1Q92541 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC26.84■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms