Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.1■□□□□ 0.81
LMX1AQ8TE12 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LMX1AQ8TE12 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 SOX15-203ENST00000570788 1093 ntBASIC20.09■□□□□ 0.81
LMX1AQ8TE12 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LMX1AQ8TE12 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 KRT17P3-201ENST00000420566 1262 ntBASIC20.08■□□□□ 0.81
LMX1AQ8TE12 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.08■□□□□ 0.81
LMX1AQ8TE12 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LMX1AQ8TE12 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
LMX1AQ8TE12 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.08■□□□□ 0.8
LMX1AQ8TE12 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 C2orf69P4-201ENST00000565394 541 ntBASIC20.07■□□□□ 0.8
LMX1AQ8TE12 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 AC087633.2-202ENST00000565166 1439 ntBASIC20.07■□□□□ 0.8
LMX1AQ8TE12 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LMX1AQ8TE12 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.06■□□□□ 0.8
LMX1AQ8TE12 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LMX1AQ8TE12 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 PGM5P4-201ENST00000421970 445 ntBASIC20.05■□□□□ 0.8
LMX1AQ8TE12 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LMX1AQ8TE12 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms