Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
USHBP1Q8N6Y0 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 AC087633.2-202ENST00000565166 1439 ntBASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
USHBP1Q8N6Y0 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
USHBP1Q8N6Y0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
USHBP1Q8N6Y0 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 SNORA78-201ENST00000459373 127 ntBASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
USHBP1Q8N6Y0 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 SERP1-205ENST00000487153 657 ntTSL 4 BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 AC006557.6-201ENST00000623071 864 ntBASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
USHBP1Q8N6Y0 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 THEM4-205ENST00000489410 643 ntTSL 2 BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 MIR4497-201ENST00000583208 89 ntBASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC27.24■■□□□ 1.95
USHBP1Q8N6Y0 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC27.23■■□□□ 1.95
USHBP1Q8N6Y0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 GOLGA2P6-201ENST00000340929 2049 ntBASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC27.22■■□□□ 1.95
USHBP1Q8N6Y0 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
USHBP1Q8N6Y0 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms