Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.62■■□□□ 1.37
SH3RF1Q7Z6J0 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 AC069236.1-201ENST00000604339 616 ntBASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.61■■□□□ 1.37
SH3RF1Q7Z6J0 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SH3RF1Q7Z6J0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 AC091874.3-201ENST00000512672 1195 ntBASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SH3RF1Q7Z6J0 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 UNC93B4-201ENST00000505679 747 ntBASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SH3RF1Q7Z6J0 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SH3RF1Q7Z6J0 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SH3RF1Q7Z6J0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.58■■□□□ 1.36
SH3RF1Q7Z6J0 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.58■■□□□ 1.36
SH3RF1Q7Z6J0 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 EEF1DP3-203ENST00000566025 782 ntBASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SH3RF1Q7Z6J0 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SH3RF1Q7Z6J0 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
SH3RF1Q7Z6J0 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms