Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 MFSD11-216ENST00000590393 1141 ntBASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 AC121338.2-201ENST00000622535 1744 ntBASIC19.71■□□□□ 0.75
TRIM40Q6P9F5 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 TERF1P5-201ENST00000477545 1207 ntBASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 AC011767.1-201ENST00000617410 1153 ntBASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 LINC01521-201ENST00000504184 1943 ntBASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM40Q6P9F5 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 AL137784.2-201ENST00000607332 1000 ntBASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TRIM40Q6P9F5 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 AC116050.2-201ENST00000612102 1779 ntBASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 AC013268.1-206ENST00000638368 961 ntBASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 AC112229.1-201ENST00000639295 961 ntBASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM40Q6P9F5 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 AL157384.1-201ENST00000445995 2473 ntBASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 AC011484.1-201ENST00000377652 1995 ntBASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 AC091799.1-201ENST00000422823 811 ntBASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 IKBKGP1-201ENST00000612193 1073 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms