Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 AC092119.3-201ENST00000612618 583 ntBASIC11.42□□□□□ -0.58
UBR4Q5T4S7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 FAM21FP-204ENST00000608637 956 ntBASIC11.42□□□□□ -0.58
UBR4Q5T4S7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
UBR4Q5T4S7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 YBX1P2-201ENST00000489612 999 ntBASIC11.41□□□□□ -0.58
UBR4Q5T4S7 VENTXP5-201ENST00000523979 775 ntBASIC11.41□□□□□ -0.58
UBR4Q5T4S7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 MESTP1-201ENST00000404287 994 ntBASIC11.41□□□□□ -0.58
UBR4Q5T4S7 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 AC011558.1-201ENST00000623459 338 ntBASIC11.41□□□□□ -0.58
UBR4Q5T4S7 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 AL445675.2-201ENST00000620291 557 ntBASIC11.41□□□□□ -0.58
UBR4Q5T4S7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
UBR4Q5T4S7 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 GALT-202ENST00000450095 1280 ntTSL 2 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 AC111152.3-201ENST00000569699 673 ntBASIC11.4□□□□□ -0.58
UBR4Q5T4S7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 AL353803.4-201ENST00000565882 1934 ntBASIC11.4□□□□□ -0.58
UBR4Q5T4S7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 AC112497.1-201ENST00000624824 639 ntBASIC11.4□□□□□ -0.58
UBR4Q5T4S7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC11.4□□□□□ -0.58
UBR4Q5T4S7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
UBR4Q5T4S7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC11.4□□□□□ -0.59
UBR4Q5T4S7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
UBR4Q5T4S7 AL353807.1-201ENST00000427475 662 ntBASIC11.39□□□□□ -0.59
UBR4Q5T4S7 AC053503.5-201ENST00000601508 636 ntBASIC11.39□□□□□ -0.59
UBR4Q5T4S7 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 LINC00543-201ENST00000567234 1845 ntBASIC11.39□□□□□ -0.59
UBR4Q5T4S7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
UBR4Q5T4S7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms