Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRIF1Q5T3J3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRIF1Q5T3J3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LRIF1Q5T3J3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRIF1Q5T3J3 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 PCDHAC2-203ENST00000615316 3011 ntBASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 KRT87P-202ENST00000534226 1464 ntBASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.4■□□□□ 0.7
LRIF1Q5T3J3 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.39■□□□□ 0.7
LRIF1Q5T3J3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LRIF1Q5T3J3 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 AC138907.5-202ENST00000569484 235 ntBASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 KRT16P2-201ENST00000414673 1423 ntBASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.39■□□□□ 0.69
LRIF1Q5T3J3 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LRIF1Q5T3J3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 AC007952.6-201ENST00000573168 2673 ntBASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 AC003957.1-201ENST00000625108 2673 ntBASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 SUDS3P1-201ENST00000505831 966 ntBASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 AC079140.4-201ENST00000507448 529 ntBASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 AL358852.1-201ENST00000623174 1268 ntBASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRIF1Q5T3J3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 AC245052.3-201ENST00000450182 901 ntBASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
LRIF1Q5T3J3 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms