Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
USP39Q53GS9 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USP39Q53GS9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
USP39Q53GS9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.91■□□□□ 0.94
USP39Q53GS9 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.91■□□□□ 0.94
USP39Q53GS9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.91■□□□□ 0.94
USP39Q53GS9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
USP39Q53GS9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.91■□□□□ 0.94
USP39Q53GS9 FAM197Y4-202ENST00000622692 608 ntBASIC20.91■□□□□ 0.94
USP39Q53GS9 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 FBXW4P1-201ENST00000426721 2239 ntBASIC20.9■□□□□ 0.94
USP39Q53GS9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.9■□□□□ 0.94
USP39Q53GS9 AC003102.1-202ENST00000563394 1796 ntBASIC20.9■□□□□ 0.94
USP39Q53GS9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.9■□□□□ 0.94
USP39Q53GS9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.9■□□□□ 0.94
USP39Q53GS9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP39Q53GS9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP39Q53GS9 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP39Q53GS9 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP39Q53GS9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.9■□□□□ 0.94
USP39Q53GS9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.9■□□□□ 0.94
USP39Q53GS9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
USP39Q53GS9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.9■□□□□ 0.94
USP39Q53GS9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.9■□□□□ 0.94
USP39Q53GS9 AC008403.3-201ENST00000598924 454 ntBASIC20.9■□□□□ 0.94
USP39Q53GS9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP39Q53GS9 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP39Q53GS9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP39Q53GS9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP39Q53GS9 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
USP39Q53GS9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.94
USP39Q53GS9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP39Q53GS9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP39Q53GS9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.89■□□□□ 0.93
USP39Q53GS9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
USP39Q53GS9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
USP39Q53GS9 KRT17P3-201ENST00000420566 1262 ntBASIC20.89■□□□□ 0.93
USP39Q53GS9 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.89■□□□□ 0.93
USP39Q53GS9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP39Q53GS9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP39Q53GS9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.89■□□□□ 0.93
USP39Q53GS9 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.89■□□□□ 0.93
USP39Q53GS9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.89■□□□□ 0.93
USP39Q53GS9 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
USP39Q53GS9 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP39Q53GS9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP39Q53GS9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.89■□□□□ 0.93
USP39Q53GS9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
USP39Q53GS9 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP39Q53GS9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP39Q53GS9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP39Q53GS9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP39Q53GS9 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
USP39Q53GS9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP39Q53GS9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP39Q53GS9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP39Q53GS9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.88■□□□□ 0.93
USP39Q53GS9 MCRIP2P1-201ENST00000394346 511 ntBASIC20.88■□□□□ 0.93
USP39Q53GS9 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP39Q53GS9 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.88■□□□□ 0.93
USP39Q53GS9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP39Q53GS9 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP39Q53GS9 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.88■□□□□ 0.93
USP39Q53GS9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
USP39Q53GS9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
USP39Q53GS9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.88■□□□□ 0.93
USP39Q53GS9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
USP39Q53GS9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
USP39Q53GS9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.88■□□□□ 0.93
USP39Q53GS9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP39Q53GS9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP39Q53GS9 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.87■□□□□ 0.93
USP39Q53GS9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP39Q53GS9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP39Q53GS9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
USP39Q53GS9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
USP39Q53GS9 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
USP39Q53GS9 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP39Q53GS9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.87■□□□□ 0.93
USP39Q53GS9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
USP39Q53GS9 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
USP39Q53GS9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.87■□□□□ 0.93
USP39Q53GS9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP39Q53GS9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP39Q53GS9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.87■□□□□ 0.93
USP39Q53GS9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
USP39Q53GS9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
USP39Q53GS9 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP39Q53GS9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.86■□□□□ 0.93
USP39Q53GS9 RPPH1-201ENST00000516869 333 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms