Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.68■■□□□ 1.38
SF3A1Q15459 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SF3A1Q15459 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
SF3A1Q15459 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
SF3A1Q15459 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.68■■□□□ 1.38
SF3A1Q15459 AC010141.2-201ENST00000452426 721 ntBASIC23.68■■□□□ 1.38
SF3A1Q15459 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.68■■□□□ 1.38
SF3A1Q15459 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.68■■□□□ 1.38
SF3A1Q15459 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 GABARAPL3-202ENST00000624044 1851 ntBASIC23.68■■□□□ 1.38
SF3A1Q15459 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.68■■□□□ 1.38
SF3A1Q15459 AC007225.1-201ENST00000566331 1836 ntBASIC23.68■■□□□ 1.38
SF3A1Q15459 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SF3A1Q15459 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SF3A1Q15459 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
SF3A1Q15459 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC23.67■■□□□ 1.38
SF3A1Q15459 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SF3A1Q15459 AP005212.1-201ENST00000581547 1997 ntBASIC23.67■■□□□ 1.38
SF3A1Q15459 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.67■■□□□ 1.38
SF3A1Q15459 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SF3A1Q15459 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SF3A1Q15459 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
SF3A1Q15459 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
SF3A1Q15459 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC23.67■■□□□ 1.38
SF3A1Q15459 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SF3A1Q15459 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.67■■□□□ 1.38
SF3A1Q15459 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.67■■□□□ 1.38
SF3A1Q15459 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SF3A1Q15459 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.66■■□□□ 1.38
SF3A1Q15459 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SF3A1Q15459 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC23.66■■□□□ 1.38
SF3A1Q15459 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SF3A1Q15459 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SF3A1Q15459 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.66■■□□□ 1.38
SF3A1Q15459 KRT18P14-201ENST00000534205 1250 ntBASIC23.66■■□□□ 1.38
SF3A1Q15459 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.66■■□□□ 1.38
SF3A1Q15459 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.66■■□□□ 1.38
SF3A1Q15459 RARRES2P11-201ENST00000635158 484 ntBASIC23.66■■□□□ 1.38
SF3A1Q15459 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
SF3A1Q15459 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SF3A1Q15459 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
SF3A1Q15459 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SF3A1Q15459 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SF3A1Q15459 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.65■■□□□ 1.38
SF3A1Q15459 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.65■■□□□ 1.38
SF3A1Q15459 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
SF3A1Q15459 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.65■■□□□ 1.38
SF3A1Q15459 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
SF3A1Q15459 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 AC011484.1-201ENST00000377652 1995 ntBASIC23.65■■□□□ 1.38
SF3A1Q15459 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SF3A1Q15459 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SF3A1Q15459 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SF3A1Q15459 FP700111.2-201ENST00000619190 1892 ntBASIC23.64■■□□□ 1.38
SF3A1Q15459 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SF3A1Q15459 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.64■■□□□ 1.38
SF3A1Q15459 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
SF3A1Q15459 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.64■■□□□ 1.38
SF3A1Q15459 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SF3A1Q15459 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.64■■□□□ 1.37
SF3A1Q15459 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SF3A1Q15459 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SF3A1Q15459 SLC7A5P2-201ENST00000553010 536 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 DUX4L2-201ENST00000561772 1275 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.64■■□□□ 1.37
SF3A1Q15459 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.64■■□□□ 1.37
SF3A1Q15459 DUX4L6-201ENST00000626483 1275 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 DUX4L1-201ENST00000627662 1275 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 DUX4L8-201ENST00000629013 1275 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 DUX4L3-201ENST00000630187 1275 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 DUX4L7-201ENST00000630678 1275 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 DUX4L5-201ENST00000630834 1275 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SF3A1Q15459 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC23.64■■□□□ 1.37
SF3A1Q15459 KRT16P2-201ENST00000414673 1423 ntBASIC23.64■■□□□ 1.37
SF3A1Q15459 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SF3A1Q15459 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SF3A1Q15459 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
SF3A1Q15459 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
SF3A1Q15459 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms