Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.35■□□□□ 0.53
CLRN1P58418 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.35■□□□□ 0.53
CLRN1P58418 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.35■□□□□ 0.53
CLRN1P58418 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.35■□□□□ 0.53
CLRN1P58418 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CLRN1P58418 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.35■□□□□ 0.53
CLRN1P58418 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.35■□□□□ 0.53
CLRN1P58418 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
CLRN1P58418 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CLRN1P58418 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CLRN1P58418 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.34■□□□□ 0.53
CLRN1P58418 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CLRN1P58418 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CLRN1P58418 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.34■□□□□ 0.53
CLRN1P58418 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
CLRN1P58418 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.34■□□□□ 0.53
CLRN1P58418 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
CLRN1P58418 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 AC026271.2-201ENST00000428091 497 ntBASIC18.34■□□□□ 0.53
CLRN1P58418 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.34■□□□□ 0.53
CLRN1P58418 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.34■□□□□ 0.53
CLRN1P58418 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.34■□□□□ 0.53
CLRN1P58418 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.34■□□□□ 0.53
CLRN1P58418 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.34■□□□□ 0.53
CLRN1P58418 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.34■□□□□ 0.53
CLRN1P58418 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.34■□□□□ 0.53
CLRN1P58418 MYCNOS-205ENST00000641950 531 ntBASIC18.34■□□□□ 0.53
CLRN1P58418 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CLRN1P58418 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CLRN1P58418 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.34■□□□□ 0.53
CLRN1P58418 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CLRN1P58418 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLRN1P58418 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.33■□□□□ 0.53
CLRN1P58418 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CLRN1P58418 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.33■□□□□ 0.53
CLRN1P58418 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CLRN1P58418 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.33■□□□□ 0.53
CLRN1P58418 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CLRN1P58418 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.33■□□□□ 0.52
CLRN1P58418 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.33■□□□□ 0.52
CLRN1P58418 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.33■□□□□ 0.52
CLRN1P58418 KRT18P5-201ENST00000436075 1291 ntBASIC18.33■□□□□ 0.52
CLRN1P58418 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
CLRN1P58418 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.33■□□□□ 0.52
CLRN1P58418 AC137761.2-201ENST00000561729 223 ntBASIC18.33■□□□□ 0.52
CLRN1P58418 AC145350.3-201ENST00000569033 163 ntBASIC18.33■□□□□ 0.52
CLRN1P58418 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.33■□□□□ 0.52
CLRN1P58418 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN1P58418 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN1P58418 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN1P58418 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN1P58418 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN1P58418 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN1P58418 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLRN1P58418 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN1P58418 AC116050.2-201ENST00000612102 1779 ntBASIC18.32■□□□□ 0.52
CLRN1P58418 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.32■□□□□ 0.52
CLRN1P58418 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN1P58418 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.32■□□□□ 0.52
CLRN1P58418 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN1P58418 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN1P58418 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLRN1P58418 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.32■□□□□ 0.52
CLRN1P58418 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.32■□□□□ 0.52
CLRN1P58418 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.32■□□□□ 0.52
CLRN1P58418 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.32■□□□□ 0.52
CLRN1P58418 MIR5787-201ENST00000611784 55 ntBASIC18.32■□□□□ 0.52
CLRN1P58418 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CLRN1P58418 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN1P58418 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
CLRN1P58418 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN1P58418 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN1P58418 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.32■□□□□ 0.52
CLRN1P58418 RBM17P2-201ENST00000616397 1405 ntBASIC18.32■□□□□ 0.52
CLRN1P58418 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLRN1P58418 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CLRN1P58418 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN1P58418 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN1P58418 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.31■□□□□ 0.52
CLRN1P58418 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN1P58418 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.31■□□□□ 0.52
CLRN1P58418 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.31■□□□□ 0.52
CLRN1P58418 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN1P58418 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms