Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMK2P53671 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMK2P53671 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.73■□□□□ 0.91
LIMK2P53671 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LIMK2P53671 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.73■□□□□ 0.91
LIMK2P53671 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.73■□□□□ 0.91
LIMK2P53671 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIMK2P53671 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.72■□□□□ 0.91
LIMK2P53671 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LIMK2P53671 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LIMK2P53671 AC007225.1-201ENST00000566331 1836 ntBASIC20.72■□□□□ 0.91
LIMK2P53671 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.72■□□□□ 0.91
LIMK2P53671 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.72■□□□□ 0.91
LIMK2P53671 AC104187.1-201ENST00000607510 612 ntBASIC20.72■□□□□ 0.91
LIMK2P53671 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIMK2P53671 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
LIMK2P53671 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
LIMK2P53671 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.71■□□□□ 0.91
LIMK2P53671 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
LIMK2P53671 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.71■□□□□ 0.91
LIMK2P53671 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
LIMK2P53671 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 AC027702.1-201ENST00000563810 1770 ntBASIC20.71■□□□□ 0.91
LIMK2P53671 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIMK2P53671 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.71■□□□□ 0.91
LIMK2P53671 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.7■□□□□ 0.9
LIMK2P53671 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.7■□□□□ 0.9
LIMK2P53671 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
LIMK2P53671 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.7■□□□□ 0.9
LIMK2P53671 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
LIMK2P53671 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.7■□□□□ 0.9
LIMK2P53671 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.7■□□□□ 0.9
LIMK2P53671 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LIMK2P53671 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK2P53671 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LIMK2P53671 AC061975.6-201ENST00000579045 1553 ntBASIC20.69■□□□□ 0.9
LIMK2P53671 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
LIMK2P53671 CROCCP5-201ENST00000436658 830 ntBASIC20.69■□□□□ 0.9
LIMK2P53671 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMK2P53671 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
LIMK2P53671 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.69■□□□□ 0.9
LIMK2P53671 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK2P53671 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMK2P53671 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK2P53671 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK2P53671 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LIMK2P53671 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMK2P53671 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LIMK2P53671 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.69■□□□□ 0.9
LIMK2P53671 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.69■□□□□ 0.9
LIMK2P53671 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK2P53671 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
LIMK2P53671 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK2P53671 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
LIMK2P53671 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK2P53671 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.68■□□□□ 0.9
LIMK2P53671 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LIMK2P53671 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms