Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHRNA4P43681 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CHRNA4P43681 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CHRNA4P43681 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHRNA4P43681 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHRNA4P43681 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
CHRNA4P43681 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHRNA4P43681 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CHRNA4P43681 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CHRNA4P43681 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.91
CHRNA4P43681 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
CHRNA4P43681 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.76■□□□□ 0.91
CHRNA4P43681 AC007225.1-201ENST00000566331 1836 ntBASIC20.76■□□□□ 0.91
CHRNA4P43681 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CHRNA4P43681 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA4P43681 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.76■□□□□ 0.91
CHRNA4P43681 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.76■□□□□ 0.91
CHRNA4P43681 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.76■□□□□ 0.91
CHRNA4P43681 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA4P43681 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA4P43681 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.76■□□□□ 0.91
CHRNA4P43681 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA4P43681 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA4P43681 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.76■□□□□ 0.91
CHRNA4P43681 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.76■□□□□ 0.91
CHRNA4P43681 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.76■□□□□ 0.91
CHRNA4P43681 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA4P43681 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA4P43681 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA4P43681 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
CHRNA4P43681 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CHRNA4P43681 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.76■□□□□ 0.91
CHRNA4P43681 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.76■□□□□ 0.91
CHRNA4P43681 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
CHRNA4P43681 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.75■□□□□ 0.91
CHRNA4P43681 CNN2P6-201ENST00000439038 900 ntBASIC20.75■□□□□ 0.91
CHRNA4P43681 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.75■□□□□ 0.91
CHRNA4P43681 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.75■□□□□ 0.91
CHRNA4P43681 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.75■□□□□ 0.91
CHRNA4P43681 BID-214ENST00000617586 542 ntTSL 5 BASIC20.75■□□□□ 0.91
CHRNA4P43681 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA4P43681 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA4P43681 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CHRNA4P43681 FEM1AP1-201ENST00000431297 1995 ntBASIC20.75■□□□□ 0.91
CHRNA4P43681 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CHRNA4P43681 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA4P43681 AC092667.1-201ENST00000434301 2586 ntBASIC20.75■□□□□ 0.91
CHRNA4P43681 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CHRNA4P43681 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
CHRNA4P43681 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.74■□□□□ 0.91
CHRNA4P43681 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA4P43681 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CHRNA4P43681 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA4P43681 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.74■□□□□ 0.91
CHRNA4P43681 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.74■□□□□ 0.91
CHRNA4P43681 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.74■□□□□ 0.91
CHRNA4P43681 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 AC073314.1-201ENST00000568729 2216 ntBASIC20.74■□□□□ 0.91
CHRNA4P43681 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CHRNA4P43681 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA4P43681 AL121603.2-201ENST00000557373 2117 ntBASIC20.74■□□□□ 0.91
CHRNA4P43681 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA4P43681 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CHRNA4P43681 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CHRNA4P43681 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 LINC01006-201ENST00000333319 2292 ntBASIC20.73■□□□□ 0.91
CHRNA4P43681 AC027702.1-201ENST00000563810 1770 ntBASIC20.73■□□□□ 0.91
CHRNA4P43681 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 AC007322.3-201ENST00000426526 701 ntBASIC20.73■□□□□ 0.91
CHRNA4P43681 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.73■□□□□ 0.91
CHRNA4P43681 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 AC013268.1-206ENST00000638368 961 ntBASIC20.73■□□□□ 0.91
CHRNA4P43681 AC112229.1-201ENST00000639295 961 ntBASIC20.73■□□□□ 0.91
CHRNA4P43681 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.73■□□□□ 0.91
CHRNA4P43681 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA4P43681 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CHRNA4P43681 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHRNA4P43681 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHRNA4P43681 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.72■□□□□ 0.91
CHRNA4P43681 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHRNA4P43681 AC004911.1-201ENST00000416316 871 ntBASIC20.72■□□□□ 0.91
CHRNA4P43681 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.72■□□□□ 0.91
CHRNA4P43681 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms