Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.81■□□□□ 0.92
TNFRSF4P43489 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TNFRSF4P43489 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.8■□□□□ 0.92
TNFRSF4P43489 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.8■□□□□ 0.92
TNFRSF4P43489 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.8■□□□□ 0.92
TNFRSF4P43489 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 AL356652.1-201ENST00000615962 565 ntBASIC20.8■□□□□ 0.92
TNFRSF4P43489 ECEL1P1-201ENST00000373592 1742 ntBASIC20.8■□□□□ 0.92
TNFRSF4P43489 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.8■□□□□ 0.92
TNFRSF4P43489 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TNFRSF4P43489 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TNFRSF4P43489 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TNFRSF4P43489 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TNFRSF4P43489 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TNFRSF4P43489 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TNFRSF4P43489 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TNFRSF4P43489 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.79■□□□□ 0.92
TNFRSF4P43489 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
TNFRSF4P43489 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
TNFRSF4P43489 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TNFRSF4P43489 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TNFRSF4P43489 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.78■□□□□ 0.92
TNFRSF4P43489 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TNFRSF4P43489 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.78■□□□□ 0.92
TNFRSF4P43489 AC005829.2-201ENST00000571422 1056 ntBASIC20.78■□□□□ 0.92
TNFRSF4P43489 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.78■□□□□ 0.92
TNFRSF4P43489 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.78■□□□□ 0.92
TNFRSF4P43489 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.78■□□□□ 0.92
TNFRSF4P43489 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TNFRSF4P43489 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TNFRSF4P43489 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.78■□□□□ 0.92
TNFRSF4P43489 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TNFRSF4P43489 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.77■□□□□ 0.92
TNFRSF4P43489 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TNFRSF4P43489 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
TNFRSF4P43489 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TNFRSF4P43489 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
TNFRSF4P43489 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
TNFRSF4P43489 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.77■□□□□ 0.92
TNFRSF4P43489 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
TNFRSF4P43489 AC120498.8-201ENST00000614275 531 ntBASIC20.77■□□□□ 0.92
TNFRSF4P43489 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
TNFRSF4P43489 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.77■□□□□ 0.92
TNFRSF4P43489 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.77■□□□□ 0.91
TNFRSF4P43489 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
TNFRSF4P43489 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.76■□□□□ 0.91
TNFRSF4P43489 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TNFRSF4P43489 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
TNFRSF4P43489 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.76■□□□□ 0.91
TNFRSF4P43489 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
TNFRSF4P43489 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.76■□□□□ 0.91
TNFRSF4P43489 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.76■□□□□ 0.91
TNFRSF4P43489 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TNFRSF4P43489 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms