Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.67■□□□□ 0.9
CCNFP41002 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.67■□□□□ 0.9
CCNFP41002 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.67■□□□□ 0.9
CCNFP41002 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCNFP41002 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CCNFP41002 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCNFP41002 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCNFP41002 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCNFP41002 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCNFP41002 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCNFP41002 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCNFP41002 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCNFP41002 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCNFP41002 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.66■□□□□ 0.9
CCNFP41002 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CCNFP41002 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCNFP41002 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.66■□□□□ 0.9
CCNFP41002 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.66■□□□□ 0.9
CCNFP41002 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCNFP41002 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
CCNFP41002 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.66■□□□□ 0.9
CCNFP41002 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.66■□□□□ 0.9
CCNFP41002 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.66■□□□□ 0.9
CCNFP41002 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.66■□□□□ 0.9
CCNFP41002 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCNFP41002 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.65■□□□□ 0.9
CCNFP41002 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 AL512408.1-201ENST00000569378 2000 ntBASIC20.65■□□□□ 0.9
CCNFP41002 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CCNFP41002 RARRES2P6-201ENST00000567333 442 ntBASIC20.65■□□□□ 0.9
CCNFP41002 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.65■□□□□ 0.9
CCNFP41002 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CCNFP41002 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCNFP41002 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCNFP41002 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.64■□□□□ 0.9
CCNFP41002 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.64■□□□□ 0.9
CCNFP41002 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCNFP41002 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
CCNFP41002 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CCNFP41002 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 AC034268.1-201ENST00000441047 882 ntBASIC20.64■□□□□ 0.89
CCNFP41002 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.64■□□□□ 0.89
CCNFP41002 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CCNFP41002 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.64■□□□□ 0.89
CCNFP41002 AFG3L1P-217ENST00000557444 2447 ntBASIC20.64■□□□□ 0.89
CCNFP41002 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.64■□□□□ 0.89
CCNFP41002 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.64■□□□□ 0.89
CCNFP41002 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CCNFP41002 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCNFP41002 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CCNFP41002 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.63■□□□□ 0.89
CCNFP41002 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.63■□□□□ 0.89
CCNFP41002 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CCNFP41002 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.63■□□□□ 0.89
CCNFP41002 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.63■□□□□ 0.89
CCNFP41002 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCNFP41002 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.63■□□□□ 0.89
CCNFP41002 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCNFP41002 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCNFP41002 AC026271.2-201ENST00000428091 497 ntBASIC20.63■□□□□ 0.89
CCNFP41002 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.63■□□□□ 0.89
CCNFP41002 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.63■□□□□ 0.89
CCNFP41002 EEF1DP3-203ENST00000566025 782 ntBASIC20.63■□□□□ 0.89
CCNFP41002 AC053503.5-201ENST00000601508 636 ntBASIC20.63■□□□□ 0.89
CCNFP41002 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.63■□□□□ 0.89
CCNFP41002 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCNFP41002 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.63■□□□□ 0.89
CCNFP41002 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCNFP41002 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCNFP41002 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCNFP41002 FP700111.2-201ENST00000619190 1892 ntBASIC20.62■□□□□ 0.89
CCNFP41002 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
CCNFP41002 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCNFP41002 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCNFP41002 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCNFP41002 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCNFP41002 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
CCNFP41002 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
CCNFP41002 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.62■□□□□ 0.89
CCNFP41002 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CCNFP41002 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.62■□□□□ 0.89
CCNFP41002 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.62■□□□□ 0.89
CCNFP41002 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms