Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RFC3P40938 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.81■□□□□ 0.6
RFC3P40938 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.81■□□□□ 0.6
RFC3P40938 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
RFC3P40938 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
RFC3P40938 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFC3P40938 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
RFC3P40938 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.81■□□□□ 0.6
RFC3P40938 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.8■□□□□ 0.6
RFC3P40938 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.8■□□□□ 0.6
RFC3P40938 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC3P40938 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC3P40938 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC3P40938 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC3P40938 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.8■□□□□ 0.6
RFC3P40938 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RFC3P40938 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.8■□□□□ 0.6
RFC3P40938 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFC3P40938 CYP2T3P-201ENST00000601990 817 ntBASIC18.8■□□□□ 0.6
RFC3P40938 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFC3P40938 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.8■□□□□ 0.6
RFC3P40938 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.8■□□□□ 0.6
RFC3P40938 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
RFC3P40938 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
RFC3P40938 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 POU5F1P3-201ENST00000428824 1078 ntBASIC18.79■□□□□ 0.6
RFC3P40938 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.79■□□□□ 0.6
RFC3P40938 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.79■□□□□ 0.6
RFC3P40938 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.79■□□□□ 0.6
RFC3P40938 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.79■□□□□ 0.6
RFC3P40938 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RFC3P40938 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.79■□□□□ 0.6
RFC3P40938 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.79■□□□□ 0.6
RFC3P40938 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.79■□□□□ 0.6
RFC3P40938 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC3P40938 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.79■□□□□ 0.6
RFC3P40938 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC3P40938 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
RFC3P40938 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RFC3P40938 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
RFC3P40938 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC3P40938 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC3P40938 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.78■□□□□ 0.6
RFC3P40938 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
RFC3P40938 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC3P40938 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
RFC3P40938 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC3P40938 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RFC3P40938 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.77■□□□□ 0.6
RFC3P40938 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFC3P40938 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFC3P40938 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.77■□□□□ 0.6
RFC3P40938 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.77■□□□□ 0.6
RFC3P40938 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.77■□□□□ 0.6
RFC3P40938 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.77■□□□□ 0.6
RFC3P40938 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.77■□□□□ 0.6
RFC3P40938 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFC3P40938 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFC3P40938 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFC3P40938 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFC3P40938 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFC3P40938 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.76■□□□□ 0.59
RFC3P40938 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms