Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 AC003102.1-202ENST00000563394 1796 ntBASIC17.42■□□□□ 0.38
USF1P22415 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
USF1P22415 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
USF1P22415 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
USF1P22415 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.41■□□□□ 0.38
USF1P22415 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.41■□□□□ 0.38
USF1P22415 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
USF1P22415 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.41■□□□□ 0.38
USF1P22415 RPS2P52-201ENST00000469610 820 ntBASIC17.41■□□□□ 0.38
USF1P22415 CDV3P1-201ENST00000471403 739 ntBASIC17.41■□□□□ 0.38
USF1P22415 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.41■□□□□ 0.38
USF1P22415 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.41■□□□□ 0.38
USF1P22415 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.41■□□□□ 0.38
USF1P22415 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
USF1P22415 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.41■□□□□ 0.38
USF1P22415 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.41■□□□□ 0.38
USF1P22415 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.41■□□□□ 0.38
USF1P22415 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
USF1P22415 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.41■□□□□ 0.38
USF1P22415 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.41■□□□□ 0.38
USF1P22415 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USF1P22415 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
USF1P22415 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USF1P22415 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.4■□□□□ 0.38
USF1P22415 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.4■□□□□ 0.38
USF1P22415 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USF1P22415 AC245052.3-201ENST00000450182 901 ntBASIC17.4■□□□□ 0.38
USF1P22415 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.4■□□□□ 0.38
USF1P22415 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
USF1P22415 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 FBXW4P1-201ENST00000426721 2239 ntBASIC17.4■□□□□ 0.38
USF1P22415 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
USF1P22415 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USF1P22415 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USF1P22415 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC17.4■□□□□ 0.38
USF1P22415 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.39■□□□□ 0.38
USF1P22415 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.39■□□□□ 0.38
USF1P22415 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
USF1P22415 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
USF1P22415 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
USF1P22415 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.39■□□□□ 0.37
USF1P22415 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.39■□□□□ 0.37
USF1P22415 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.39■□□□□ 0.37
USF1P22415 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.39■□□□□ 0.37
USF1P22415 GCSHP5-201ENST00000443090 522 ntBASIC17.39■□□□□ 0.37
USF1P22415 AC128676.1-201ENST00000454392 318 ntBASIC17.39■□□□□ 0.37
USF1P22415 AC098590.1-201ENST00000468126 897 ntBASIC17.39■□□□□ 0.37
USF1P22415 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.39■□□□□ 0.37
USF1P22415 FAM21FP-204ENST00000608637 956 ntBASIC17.39■□□□□ 0.37
USF1P22415 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
USF1P22415 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USF1P22415 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.39■□□□□ 0.37
USF1P22415 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USF1P22415 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF1P22415 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.38■□□□□ 0.37
USF1P22415 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF1P22415 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
USF1P22415 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.38■□□□□ 0.37
USF1P22415 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
USF1P22415 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF1P22415 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USF1P22415 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.38■□□□□ 0.37
USF1P22415 AL158047.1-201ENST00000445918 881 ntBASIC17.38■□□□□ 0.37
USF1P22415 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USF1P22415 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.38■□□□□ 0.37
USF1P22415 AC142381.4-202ENST00000563973 229 ntBASIC17.38■□□□□ 0.37
USF1P22415 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USF1P22415 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USF1P22415 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.38■□□□□ 0.37
USF1P22415 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
USF1P22415 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms