Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN9O95484 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.89■□□□□ 0.77
CLDN9O95484 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.89■□□□□ 0.77
CLDN9O95484 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CLDN9O95484 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CLDN9O95484 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.88■□□□□ 0.77
CLDN9O95484 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN9O95484 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 AC020907.5-201ENST00000624372 1936 ntBASIC19.88■□□□□ 0.77
CLDN9O95484 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN9O95484 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN9O95484 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN9O95484 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN9O95484 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.88■□□□□ 0.77
CLDN9O95484 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.88■□□□□ 0.77
CLDN9O95484 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.88■□□□□ 0.77
CLDN9O95484 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN9O95484 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN9O95484 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.88■□□□□ 0.77
CLDN9O95484 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CLDN9O95484 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.87■□□□□ 0.77
CLDN9O95484 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.87■□□□□ 0.77
CLDN9O95484 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.87■□□□□ 0.77
CLDN9O95484 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CLDN9O95484 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
CLDN9O95484 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.87■□□□□ 0.77
CLDN9O95484 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.87■□□□□ 0.77
CLDN9O95484 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLDN9O95484 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CLDN9O95484 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CLDN9O95484 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CLDN9O95484 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
CLDN9O95484 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLDN9O95484 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CLDN9O95484 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.86■□□□□ 0.77
CLDN9O95484 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.86■□□□□ 0.77
CLDN9O95484 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.86■□□□□ 0.77
CLDN9O95484 AC243732.1-201ENST00000612648 864 ntBASIC19.86■□□□□ 0.77
CLDN9O95484 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.86■□□□□ 0.77
CLDN9O95484 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.86■□□□□ 0.77
CLDN9O95484 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CLDN9O95484 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.86■□□□□ 0.77
CLDN9O95484 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.86■□□□□ 0.77
CLDN9O95484 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLDN9O95484 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.85■□□□□ 0.77
CLDN9O95484 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.85■□□□□ 0.77
CLDN9O95484 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CLDN9O95484 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLDN9O95484 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.85■□□□□ 0.77
CLDN9O95484 RBM17P2-201ENST00000616397 1405 ntBASIC19.85■□□□□ 0.77
CLDN9O95484 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CLDN9O95484 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CLDN9O95484 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 AC019069.1-201ENST00000610008 1333 ntBASIC19.84■□□□□ 0.77
CLDN9O95484 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.84■□□□□ 0.77
CLDN9O95484 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.84■□□□□ 0.77
CLDN9O95484 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.84■□□□□ 0.77
CLDN9O95484 KRT18P61-201ENST00000585825 1298 ntBASIC19.84■□□□□ 0.77
CLDN9O95484 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.84■□□□□ 0.77
CLDN9O95484 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CLDN9O95484 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLDN9O95484 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.84■□□□□ 0.77
CLDN9O95484 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms