Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM13O60858 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM13O60858 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM13O60858 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM13O60858 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM13O60858 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM13O60858 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM13O60858 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM13O60858 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM13O60858 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
TRIM13O60858 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM13O60858 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM13O60858 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.23■□□□□ 0.83
TRIM13O60858 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM13O60858 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
TRIM13O60858 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.23■□□□□ 0.83
TRIM13O60858 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM13O60858 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM13O60858 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM13O60858 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM13O60858 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM13O60858 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM13O60858 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM13O60858 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TRIM13O60858 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM13O60858 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
TRIM13O60858 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.22■□□□□ 0.83
TRIM13O60858 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
TRIM13O60858 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.22■□□□□ 0.83
TRIM13O60858 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM13O60858 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM13O60858 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM13O60858 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM13O60858 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM13O60858 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM13O60858 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.21■□□□□ 0.83
TRIM13O60858 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
TRIM13O60858 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
TRIM13O60858 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM13O60858 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM13O60858 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM13O60858 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 AC092720.2-201ENST00000602388 1665 ntBASIC20.2■□□□□ 0.82
TRIM13O60858 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM13O60858 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM13O60858 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRIM13O60858 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRIM13O60858 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
TRIM13O60858 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM13O60858 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
TRIM13O60858 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TRIM13O60858 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
TRIM13O60858 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM13O60858 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM13O60858 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM13O60858 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM13O60858 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM13O60858 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM13O60858 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM13O60858 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM13O60858 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM13O60858 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
TRIM13O60858 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM13O60858 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.19■□□□□ 0.82
TRIM13O60858 PBX2P1-201ENST00000493219 1291 ntBASIC20.19■□□□□ 0.82
TRIM13O60858 AP001330.3-201ENST00000520123 633 ntBASIC20.19■□□□□ 0.82
TRIM13O60858 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms