Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX3O60493 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SNX3O60493 AC011484.1-201ENST00000377652 1995 ntBASIC20.27■□□□□ 0.84
SNX3O60493 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX3O60493 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SNX3O60493 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.27■□□□□ 0.84
SNX3O60493 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX3O60493 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SNX3O60493 BX005040.4-201ENST00000637145 1518 ntBASIC20.27■□□□□ 0.83
SNX3O60493 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
SNX3O60493 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.83
SNX3O60493 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.27■□□□□ 0.83
SNX3O60493 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX3O60493 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SNX3O60493 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SNX3O60493 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX3O60493 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 BX664725.1-201ENST00000438252 379 ntBASIC20.26■□□□□ 0.83
SNX3O60493 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 AL117332.1-201ENST00000622628 974 ntBASIC20.26■□□□□ 0.83
SNX3O60493 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
SNX3O60493 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX3O60493 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX3O60493 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.26■□□□□ 0.83
SNX3O60493 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SNX3O60493 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SNX3O60493 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX3O60493 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SNX3O60493 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.25■□□□□ 0.83
SNX3O60493 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX3O60493 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.25■□□□□ 0.83
SNX3O60493 MTDHP2-201ENST00000601468 714 ntBASIC20.25■□□□□ 0.83
SNX3O60493 AL031848.2-201ENST00000607670 837 ntBASIC20.25■□□□□ 0.83
SNX3O60493 NEFHP1-201ENST00000412845 2629 ntBASIC20.25■□□□□ 0.83
SNX3O60493 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
SNX3O60493 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX3O60493 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX3O60493 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SNX3O60493 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.25■□□□□ 0.83
SNX3O60493 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
SNX3O60493 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX3O60493 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX3O60493 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.25■□□□□ 0.83
SNX3O60493 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SNX3O60493 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SNX3O60493 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
SNX3O60493 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SNX3O60493 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX3O60493 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX3O60493 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.24■□□□□ 0.83
SNX3O60493 TSPY13P-201ENST00000338964 914 ntBASIC20.24■□□□□ 0.83
SNX3O60493 YBX1P4-201ENST00000392794 808 ntBASIC20.24■□□□□ 0.83
SNX3O60493 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX3O60493 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
SNX3O60493 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.24■□□□□ 0.83
SNX3O60493 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.24■□□□□ 0.83
SNX3O60493 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX3O60493 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX3O60493 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
SNX3O60493 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX3O60493 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.24■□□□□ 0.83
SNX3O60493 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX3O60493 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX3O60493 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SNX3O60493 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.24■□□□□ 0.83
SNX3O60493 LETM1P2-201ENST00000597330 2178 ntBASIC20.24■□□□□ 0.83
SNX3O60493 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.24■□□□□ 0.83
SNX3O60493 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX3O60493 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SNX3O60493 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.23■□□□□ 0.83
SNX3O60493 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX3O60493 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SNX3O60493 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX3O60493 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
SNX3O60493 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX3O60493 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX3O60493 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX3O60493 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.23■□□□□ 0.83
SNX3O60493 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX3O60493 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms