Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC011484.1-201ENST00000377652 1995 ntBASIC22.5■■□□□ 1.19
CLDN3O15551 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLDN3O15551 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.5■■□□□ 1.19
CLDN3O15551 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CLDN3O15551 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CLDN3O15551 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN3O15551 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN3O15551 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN3O15551 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN3O15551 AC005229.4-201ENST00000610085 2198 ntBASIC22.49■■□□□ 1.19
CLDN3O15551 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN3O15551 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN3O15551 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.49■■□□□ 1.19
CLDN3O15551 PHB2-213ENST00000546111 858 ntTSL 2 BASIC22.49■■□□□ 1.19
CLDN3O15551 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.49■■□□□ 1.19
CLDN3O15551 AC100791.3-201ENST00000617619 330 ntBASIC22.49■■□□□ 1.19
CLDN3O15551 PFKL-212ENST00000628044 129 ntTSL 3 BASIC22.49■■□□□ 1.19
CLDN3O15551 MARS-234ENST00000630571 216 ntTSL 5 BASIC22.49■■□□□ 1.19
CLDN3O15551 MARS-235ENST00000630803 183 ntTSL 3 BASIC22.49■■□□□ 1.19
CLDN3O15551 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.49■■□□□ 1.19
CLDN3O15551 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
CLDN3O15551 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC22.49■■□□□ 1.19
CLDN3O15551 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN3O15551 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN3O15551 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
CLDN3O15551 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22.48■■□□□ 1.19
CLDN3O15551 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN3O15551 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.48■■□□□ 1.19
CLDN3O15551 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN3O15551 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
CLDN3O15551 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN3O15551 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.48■■□□□ 1.19
CLDN3O15551 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN3O15551 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 PALM-208ENST00000592155 2272 ntTSL 4 BASIC22.47■■□□□ 1.19
CLDN3O15551 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
CLDN3O15551 AL355802.2-201ENST00000402069 882 ntBASIC22.47■■□□□ 1.19
CLDN3O15551 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.47■■□□□ 1.19
CLDN3O15551 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22.47■■□□□ 1.19
CLDN3O15551 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.47■■□□□ 1.19
CLDN3O15551 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC22.47■■□□□ 1.19
CLDN3O15551 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
CLDN3O15551 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.47■■□□□ 1.19
CLDN3O15551 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN3O15551 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.47■■□□□ 1.19
CLDN3O15551 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLDN3O15551 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC22.46■■□□□ 1.19
CLDN3O15551 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC22.46■■□□□ 1.19
CLDN3O15551 MIPEPP3-201ENST00000412105 444 ntBASIC22.46■■□□□ 1.19
CLDN3O15551 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.46■■□□□ 1.19
CLDN3O15551 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC22.46■■□□□ 1.19
CLDN3O15551 ISCU-212ENST00000547005 795 ntTSL 3 BASIC22.46■■□□□ 1.19
CLDN3O15551 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLDN3O15551 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLDN3O15551 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
CLDN3O15551 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC22.46■■□□□ 1.19
CLDN3O15551 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLDN3O15551 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.46■■□□□ 1.19
CLDN3O15551 AC121338.2-201ENST00000622535 1744 ntBASIC22.45■■□□□ 1.19
CLDN3O15551 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.19
CLDN3O15551 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.45■■□□□ 1.18
CLDN3O15551 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN3O15551 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN3O15551 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC22.45■■□□□ 1.18
CLDN3O15551 MCRIP2P1-201ENST00000394346 511 ntBASIC22.45■■□□□ 1.18
CLDN3O15551 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.45■■□□□ 1.18
CLDN3O15551 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN3O15551 AC142086.2-201ENST00000569753 217 ntBASIC22.45■■□□□ 1.18
CLDN3O15551 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC22.45■■□□□ 1.18
CLDN3O15551 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC22.45■■□□□ 1.18
CLDN3O15551 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC22.45■■□□□ 1.18
CLDN3O15551 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN3O15551 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.45■■□□□ 1.18
CLDN3O15551 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN3O15551 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN3O15551 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN3O15551 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN3O15551 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.44■■□□□ 1.18
CLDN3O15551 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22.44■■□□□ 1.18
CLDN3O15551 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CLDN3O15551 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
CLDN3O15551 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
CLDN3O15551 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.44■■□□□ 1.18
CLDN3O15551 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CLDN3O15551 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.44■■□□□ 1.18
CLDN3O15551 BX276092.2-201ENST00000417668 665 ntBASIC22.44■■□□□ 1.18
CLDN3O15551 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
CLDN3O15551 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.44■■□□□ 1.18
CLDN3O15551 AL138781.1-201ENST00000566567 1274 ntBASIC22.44■■□□□ 1.18
CLDN3O15551 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.44■■□□□ 1.18
CLDN3O15551 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.44■■□□□ 1.18
CLDN3O15551 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms