Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.01■□□□□ 0.79
HDAC3O15379 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.01■□□□□ 0.79
HDAC3O15379 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.01■□□□□ 0.79
HDAC3O15379 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.01■□□□□ 0.79
HDAC3O15379 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC3O15379 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20■□□□□ 0.79
HDAC3O15379 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
HDAC3O15379 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20■□□□□ 0.79
HDAC3O15379 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
HDAC3O15379 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC3O15379 UNC93B3-201ENST00000308076 687 ntBASIC20■□□□□ 0.79
HDAC3O15379 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20■□□□□ 0.79
HDAC3O15379 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20■□□□□ 0.79
HDAC3O15379 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20■□□□□ 0.79
HDAC3O15379 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC3O15379 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC3O15379 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC3O15379 AC061975.6-201ENST00000579045 1553 ntBASIC20■□□□□ 0.79
HDAC3O15379 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC3O15379 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC3O15379 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC3O15379 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.99■□□□□ 0.79
HDAC3O15379 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HDAC3O15379 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC3O15379 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.99■□□□□ 0.79
HDAC3O15379 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
HDAC3O15379 TCF3P1-201ENST00000423021 1937 ntBASIC19.99■□□□□ 0.79
HDAC3O15379 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.99■□□□□ 0.79
HDAC3O15379 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
HDAC3O15379 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
HDAC3O15379 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.99■□□□□ 0.79
HDAC3O15379 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HDAC3O15379 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
HDAC3O15379 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.98■□□□□ 0.79
HDAC3O15379 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HDAC3O15379 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
HDAC3O15379 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.98■□□□□ 0.79
HDAC3O15379 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.98■□□□□ 0.79
HDAC3O15379 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.98■□□□□ 0.79
HDAC3O15379 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.98■□□□□ 0.79
HDAC3O15379 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.98■□□□□ 0.79
HDAC3O15379 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC3O15379 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC3O15379 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC3O15379 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC3O15379 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC3O15379 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC3O15379 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC3O15379 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC3O15379 AL136116.3-201ENST00000402907 1138 ntBASIC19.97■□□□□ 0.79
HDAC3O15379 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC3O15379 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.97■□□□□ 0.79
HDAC3O15379 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC3O15379 AC024257.2-201ENST00000549699 147 ntBASIC19.97■□□□□ 0.79
HDAC3O15379 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
HDAC3O15379 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC3O15379 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC3O15379 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC3O15379 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HDAC3O15379 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.96■□□□□ 0.79
HDAC3O15379 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.96■□□□□ 0.79
HDAC3O15379 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC3O15379 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC3O15379 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.96■□□□□ 0.79
HDAC3O15379 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC3O15379 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC3O15379 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC3O15379 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
HDAC3O15379 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC3O15379 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC3O15379 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HDAC3O15379 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.95■□□□□ 0.79
HDAC3O15379 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.95■□□□□ 0.78
HDAC3O15379 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HDAC3O15379 AL136162.1-201ENST00000607711 1078 ntBASIC19.95■□□□□ 0.78
HDAC3O15379 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HDAC3O15379 TSPY26P-201ENST00000476365 1326 ntBASIC19.95■□□□□ 0.78
HDAC3O15379 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms