Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.05■■□□□ 1.12
FOXN3O00409 RARRES2P6-201ENST00000567333 442 ntBASIC22.05■■□□□ 1.12
FOXN3O00409 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC22.05■■□□□ 1.12
FOXN3O00409 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
FOXN3O00409 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC22.05■■□□□ 1.12
FOXN3O00409 MYCNOS-205ENST00000641950 531 ntBASIC22.05■■□□□ 1.12
FOXN3O00409 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
FOXN3O00409 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
FOXN3O00409 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.05■■□□□ 1.12
FOXN3O00409 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
FOXN3O00409 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC22.04■■□□□ 1.12
FOXN3O00409 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 PARP1-202ENST00000366792 553 ntTSL 3 BASIC22.04■■□□□ 1.12
FOXN3O00409 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC22.04■■□□□ 1.12
FOXN3O00409 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.04■■□□□ 1.12
FOXN3O00409 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.04■■□□□ 1.12
FOXN3O00409 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
FOXN3O00409 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
FOXN3O00409 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.04■■□□□ 1.12
FOXN3O00409 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
FOXN3O00409 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
FOXN3O00409 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC22.03■■□□□ 1.12
FOXN3O00409 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
FOXN3O00409 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
FOXN3O00409 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
FOXN3O00409 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.03■■□□□ 1.12
FOXN3O00409 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.03■■□□□ 1.12
FOXN3O00409 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.03■■□□□ 1.12
FOXN3O00409 AC020907.5-201ENST00000624372 1936 ntBASIC22.03■■□□□ 1.12
FOXN3O00409 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
FOXN3O00409 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
FOXN3O00409 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
FOXN3O00409 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
FOXN3O00409 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC22.03■■□□□ 1.12
FOXN3O00409 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
FOXN3O00409 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC22.02■■□□□ 1.12
FOXN3O00409 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.02■■□□□ 1.12
FOXN3O00409 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
FOXN3O00409 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC22.02■■□□□ 1.12
FOXN3O00409 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC22.02■■□□□ 1.12
FOXN3O00409 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.02■■□□□ 1.12
FOXN3O00409 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
FOXN3O00409 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC22.02■■□□□ 1.12
FOXN3O00409 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC22.02■■□□□ 1.12
FOXN3O00409 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.02■■□□□ 1.12
FOXN3O00409 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.02■■□□□ 1.12
FOXN3O00409 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
FOXN3O00409 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
FOXN3O00409 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
FOXN3O00409 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.02■■□□□ 1.11
FOXN3O00409 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.11
FOXN3O00409 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
FOXN3O00409 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.01■■□□□ 1.11
FOXN3O00409 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC22.01■■□□□ 1.11
FOXN3O00409 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC22.01■■□□□ 1.11
FOXN3O00409 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
FOXN3O00409 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.01■■□□□ 1.11
FOXN3O00409 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
FOXN3O00409 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
FOXN3O00409 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC22■■□□□ 1.11
FOXN3O00409 DET1-207ENST00000564406 2315 ntTSL 2 BASIC22■■□□□ 1.11
FOXN3O00409 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC22■■□□□ 1.11
FOXN3O00409 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC22■■□□□ 1.11
FOXN3O00409 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22■■□□□ 1.11
FOXN3O00409 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC22■■□□□ 1.11
FOXN3O00409 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC22■■□□□ 1.11
FOXN3O00409 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22■■□□□ 1.11
FOXN3O00409 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22■■□□□ 1.11
FOXN3O00409 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22■■□□□ 1.11
FOXN3O00409 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22■■□□□ 1.11
FOXN3O00409 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
FOXN3O00409 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
FOXN3O00409 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
FOXN3O00409 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
FOXN3O00409 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.99■■□□□ 1.11
FOXN3O00409 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms