Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.18■■□□□ 1.14
LRRC53A6NM62 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
LRRC53A6NM62 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.18■■□□□ 1.14
LRRC53A6NM62 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
LRRC53A6NM62 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC53A6NM62 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC22.18■■□□□ 1.14
LRRC53A6NM62 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
LRRC53A6NM62 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.18■■□□□ 1.14
LRRC53A6NM62 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC53A6NM62 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC53A6NM62 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.18■■□□□ 1.14
LRRC53A6NM62 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC53A6NM62 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LRRC53A6NM62 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.17■■□□□ 1.14
LRRC53A6NM62 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.17■■□□□ 1.14
LRRC53A6NM62 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.17■■□□□ 1.14
LRRC53A6NM62 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 AC010141.2-201ENST00000452426 721 ntBASIC22.17■■□□□ 1.14
LRRC53A6NM62 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.17■■□□□ 1.14
LRRC53A6NM62 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC22.17■■□□□ 1.14
LRRC53A6NM62 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRC53A6NM62 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRC53A6NM62 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRC53A6NM62 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRC53A6NM62 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
LRRC53A6NM62 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
LRRC53A6NM62 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRC53A6NM62 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
LRRC53A6NM62 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRC53A6NM62 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRC53A6NM62 AC245052.3-201ENST00000450182 901 ntBASIC22.16■■□□□ 1.14
LRRC53A6NM62 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LRRC53A6NM62 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.16■■□□□ 1.14
LRRC53A6NM62 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.16■■□□□ 1.14
LRRC53A6NM62 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRC53A6NM62 AC099778.1-201ENST00000568593 1911 ntBASIC22.16■■□□□ 1.14
LRRC53A6NM62 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
LRRC53A6NM62 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRC53A6NM62 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LRRC53A6NM62 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRC53A6NM62 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC22.15■■□□□ 1.14
LRRC53A6NM62 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRC53A6NM62 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.15■■□□□ 1.14
LRRC53A6NM62 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC22.15■■□□□ 1.14
LRRC53A6NM62 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.15■■□□□ 1.14
LRRC53A6NM62 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.15■■□□□ 1.14
LRRC53A6NM62 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRC53A6NM62 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.15■■□□□ 1.14
LRRC53A6NM62 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRC53A6NM62 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.15■■□□□ 1.14
LRRC53A6NM62 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.14■■□□□ 1.14
LRRC53A6NM62 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 AC104187.1-201ENST00000607510 612 ntBASIC22.14■■□□□ 1.13
LRRC53A6NM62 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
LRRC53A6NM62 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.14■■□□□ 1.13
LRRC53A6NM62 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
LRRC53A6NM62 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRRC53A6NM62 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.14■■□□□ 1.13
LRRC53A6NM62 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.13■■□□□ 1.13
LRRC53A6NM62 LINC02228-203ENST00000641970 1355 ntBASIC22.13■■□□□ 1.13
LRRC53A6NM62 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.13■■□□□ 1.13
LRRC53A6NM62 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC22.13■■□□□ 1.13
LRRC53A6NM62 SLC7A5P2-201ENST00000553010 536 ntBASIC22.13■■□□□ 1.13
LRRC53A6NM62 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.13■■□□□ 1.13
LRRC53A6NM62 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
LRRC53A6NM62 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRC53A6NM62 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
LRRC53A6NM62 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.12■■□□□ 1.13
LRRC53A6NM62 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRRC53A6NM62 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.12■■□□□ 1.13
LRRC53A6NM62 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
LRRC53A6NM62 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRRC53A6NM62 AC092720.2-201ENST00000602388 1665 ntBASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms