Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
PCDHA1Q9Y5I3 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.7■■□□□ 1.39
PCDHA1Q9Y5I3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.7■■□□□ 1.39
PCDHA1Q9Y5I3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 LSM12P1-201ENST00000411836 588 ntBASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 FEM1AP4-201ENST00000443167 1987 ntBASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.7■■□□□ 1.38
PCDHA1Q9Y5I3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 CYP21A1P-202ENST00000354927 1481 ntBASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 KRT18P6-201ENST00000555540 1265 ntBASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 AL049796.1-201ENST00000565336 1766 ntBASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.69■■□□□ 1.38
PCDHA1Q9Y5I3 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.68■■□□□ 1.38
PCDHA1Q9Y5I3 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 KRT18P68-201ENST00000392293 1000 ntBASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 DUSP5P2-201ENST00000426873 1033 ntBASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PCDHA1Q9Y5I3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 AC011484.1-201ENST00000377652 1995 ntBASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 AC097658.1-201ENST00000475555 843 ntBASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 AC091874.3-201ENST00000512672 1195 ntBASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 CD99P1-205ENST00000527459 561 ntBASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 MYC-209ENST00000641252 345 ntBASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.66■■□□□ 1.38
PCDHA1Q9Y5I3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
PCDHA1Q9Y5I3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms