Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 AL589743.5-201ENST00000616611 1050 ntBASIC18.72■□□□□ 0.59
SHANK1Q9Y566 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SHANK1Q9Y566 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 AC003102.1-202ENST00000563394 1796 ntBASIC18.7■□□□□ 0.58
SHANK1Q9Y566 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 KRT18P21-201ENST00000515767 1272 ntBASIC18.7■□□□□ 0.58
SHANK1Q9Y566 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 RN7SL471P-201ENST00000580476 299 ntBASIC18.7■□□□□ 0.58
SHANK1Q9Y566 AL049637.2-201ENST00000641778 930 ntBASIC18.7■□□□□ 0.58
SHANK1Q9Y566 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SHANK1Q9Y566 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 GUSBP5-202ENST00000510805 1989 ntBASIC18.69■□□□□ 0.58
SHANK1Q9Y566 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 TSPY7P-201ENST00000431358 1114 ntBASIC18.69■□□□□ 0.58
SHANK1Q9Y566 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHANK1Q9Y566 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 AC245052.3-201ENST00000450182 901 ntBASIC18.68■□□□□ 0.58
SHANK1Q9Y566 CDV3P1-201ENST00000471403 739 ntBASIC18.68■□□□□ 0.58
SHANK1Q9Y566 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms