Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LRFN1Q9P244 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
LRFN1Q9P244 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.94■□□□□ 0.62
LRFN1Q9P244 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.94■□□□□ 0.62
LRFN1Q9P244 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.94■□□□□ 0.62
LRFN1Q9P244 AL589743.5-201ENST00000616611 1050 ntBASIC18.94■□□□□ 0.62
LRFN1Q9P244 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.94■□□□□ 0.62
LRFN1Q9P244 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.94■□□□□ 0.62
LRFN1Q9P244 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LRFN1Q9P244 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.94■□□□□ 0.62
LRFN1Q9P244 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LRFN1Q9P244 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LRFN1Q9P244 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LRFN1Q9P244 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LRFN1Q9P244 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LRFN1Q9P244 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LRFN1Q9P244 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.93■□□□□ 0.62
LRFN1Q9P244 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.92■□□□□ 0.62
LRFN1Q9P244 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
LRFN1Q9P244 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
LRFN1Q9P244 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
LRFN1Q9P244 KRT18P68-201ENST00000392293 1000 ntBASIC18.92■□□□□ 0.62
LRFN1Q9P244 POU5F1P3-201ENST00000428824 1078 ntBASIC18.92■□□□□ 0.62
LRFN1Q9P244 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
LRFN1Q9P244 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.92■□□□□ 0.62
LRFN1Q9P244 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.92■□□□□ 0.62
LRFN1Q9P244 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.92■□□□□ 0.62
LRFN1Q9P244 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LRFN1Q9P244 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRFN1Q9P244 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.91■□□□□ 0.62
LRFN1Q9P244 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
LRFN1Q9P244 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.9■□□□□ 0.62
LRFN1Q9P244 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LRFN1Q9P244 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
LRFN1Q9P244 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.9■□□□□ 0.62
LRFN1Q9P244 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.9■□□□□ 0.62
LRFN1Q9P244 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LRFN1Q9P244 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.9■□□□□ 0.62
LRFN1Q9P244 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 CYP21A1P-202ENST00000354927 1481 ntBASIC18.9■□□□□ 0.62
LRFN1Q9P244 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRFN1Q9P244 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
LRFN1Q9P244 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LRFN1Q9P244 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
LRFN1Q9P244 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LRFN1Q9P244 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRFN1Q9P244 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.89■□□□□ 0.61
LRFN1Q9P244 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.89■□□□□ 0.61
LRFN1Q9P244 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms