Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 AC245052.3-201ENST00000450182 901 ntBASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
PTCHD3Q3KNS1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.13■□□□□ 0.81
PTCHD3Q3KNS1 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTCHD3Q3KNS1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 SLC25A24-204ENST00000569674 2357 ntBASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 DUX4L16-201ENST00000555130 1264 ntBASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTCHD3Q3KNS1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
PTCHD3Q3KNS1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms