Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.12■□□□□ 0.81
YBX1P67809 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
YBX1P67809 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.11■□□□□ 0.81
YBX1P67809 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
YBX1P67809 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
YBX1P67809 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
YBX1P67809 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
YBX1P67809 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.11■□□□□ 0.81
YBX1P67809 BID-214ENST00000617586 542 ntTSL 5 BASIC20.11■□□□□ 0.81
YBX1P67809 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.11■□□□□ 0.81
YBX1P67809 RARRES2P11-201ENST00000635158 484 ntBASIC20.11■□□□□ 0.81
YBX1P67809 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
YBX1P67809 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.11■□□□□ 0.81
YBX1P67809 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.11■□□□□ 0.81
YBX1P67809 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.11■□□□□ 0.81
YBX1P67809 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
YBX1P67809 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.1■□□□□ 0.81
YBX1P67809 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
YBX1P67809 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
YBX1P67809 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
YBX1P67809 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.1■□□□□ 0.81
YBX1P67809 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
YBX1P67809 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.1■□□□□ 0.81
YBX1P67809 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
YBX1P67809 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
YBX1P67809 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.1■□□□□ 0.81
YBX1P67809 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.1■□□□□ 0.81
YBX1P67809 DUX4L16-201ENST00000555130 1264 ntBASIC20.1■□□□□ 0.81
YBX1P67809 AC080038.1-201ENST00000611274 1154 ntBASIC20.1■□□□□ 0.81
YBX1P67809 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
YBX1P67809 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
YBX1P67809 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
YBX1P67809 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
YBX1P67809 AL391422.3-201ENST00000603791 2761 ntBASIC20.1■□□□□ 0.81
YBX1P67809 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.1■□□□□ 0.81
YBX1P67809 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
YBX1P67809 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.09■□□□□ 0.81
YBX1P67809 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.09■□□□□ 0.81
YBX1P67809 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.09■□□□□ 0.81
YBX1P67809 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.09■□□□□ 0.81
YBX1P67809 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.09■□□□□ 0.81
YBX1P67809 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 AC120498.10-201ENST00000621827 505 ntBASIC20.09■□□□□ 0.81
YBX1P67809 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.09■□□□□ 0.81
YBX1P67809 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.09■□□□□ 0.81
YBX1P67809 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
YBX1P67809 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.08■□□□□ 0.81
YBX1P67809 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.08■□□□□ 0.81
YBX1P67809 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.08■□□□□ 0.81
YBX1P67809 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
YBX1P67809 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
YBX1P67809 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
YBX1P67809 KRT18P11-201ENST00000435214 1283 ntBASIC20.08■□□□□ 0.81
YBX1P67809 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
YBX1P67809 SLC7A5P1-201ENST00000568957 537 ntBASIC20.08■□□□□ 0.81
YBX1P67809 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.08■□□□□ 0.81
YBX1P67809 AC010536.3-201ENST00000620306 533 ntBASIC20.08■□□□□ 0.81
YBX1P67809 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
YBX1P67809 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
YBX1P67809 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
YBX1P67809 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
YBX1P67809 RBM17P2-201ENST00000616397 1405 ntBASIC20.08■□□□□ 0.8
YBX1P67809 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
YBX1P67809 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
YBX1P67809 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
YBX1P67809 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
YBX1P67809 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
YBX1P67809 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.08■□□□□ 0.8
YBX1P67809 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.07■□□□□ 0.8
YBX1P67809 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.07■□□□□ 0.8
YBX1P67809 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.07■□□□□ 0.8
YBX1P67809 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.07■□□□□ 0.8
YBX1P67809 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
YBX1P67809 CDCA4P2-201ENST00000441182 718 ntBASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms