Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM6P62312 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM6P62312 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.1■□□□□ 0.49
LSM6P62312 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM6P62312 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM6P62312 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM6P62312 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM6P62312 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM6P62312 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.1■□□□□ 0.49
LSM6P62312 AC087623.3-201ENST00000607047 1098 ntBASIC18.1■□□□□ 0.49
LSM6P62312 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM6P62312 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LSM6P62312 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM6P62312 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.1■□□□□ 0.49
LSM6P62312 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LSM6P62312 AC027702.1-201ENST00000563810 1770 ntBASIC18.09■□□□□ 0.49
LSM6P62312 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.09■□□□□ 0.49
LSM6P62312 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.09■□□□□ 0.49
LSM6P62312 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.09■□□□□ 0.49
LSM6P62312 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.09■□□□□ 0.49
LSM6P62312 AC091799.1-201ENST00000422823 811 ntBASIC18.09■□□□□ 0.49
LSM6P62312 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.09■□□□□ 0.49
LSM6P62312 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.09■□□□□ 0.49
LSM6P62312 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
LSM6P62312 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.09■□□□□ 0.49
LSM6P62312 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 UBE2DNL-204ENST00000602536 740 ntBASIC18.09■□□□□ 0.49
LSM6P62312 MYCNOS-205ENST00000641950 531 ntBASIC18.09■□□□□ 0.49
LSM6P62312 GABARAPL3-202ENST00000624044 1851 ntBASIC18.09■□□□□ 0.49
LSM6P62312 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.09■□□□□ 0.49
LSM6P62312 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LSM6P62312 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LSM6P62312 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LSM6P62312 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LSM6P62312 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
LSM6P62312 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.08■□□□□ 0.49
LSM6P62312 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM6P62312 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.08■□□□□ 0.48
LSM6P62312 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.08■□□□□ 0.48
LSM6P62312 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.08■□□□□ 0.48
LSM6P62312 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
LSM6P62312 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
LSM6P62312 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM6P62312 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM6P62312 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM6P62312 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.08■□□□□ 0.48
LSM6P62312 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM6P62312 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
LSM6P62312 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.07■□□□□ 0.48
LSM6P62312 FP700111.2-201ENST00000619190 1892 ntBASIC18.07■□□□□ 0.48
LSM6P62312 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LSM6P62312 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.07■□□□□ 0.48
LSM6P62312 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.07■□□□□ 0.48
LSM6P62312 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.07■□□□□ 0.48
LSM6P62312 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LSM6P62312 KRT18P11-201ENST00000435214 1283 ntBASIC18.07■□□□□ 0.48
LSM6P62312 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.07■□□□□ 0.48
LSM6P62312 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
LSM6P62312 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.07■□□□□ 0.48
LSM6P62312 AP005212.1-201ENST00000581547 1997 ntBASIC18.07■□□□□ 0.48
LSM6P62312 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.07■□□□□ 0.48
LSM6P62312 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
LSM6P62312 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.07■□□□□ 0.48
LSM6P62312 AL157384.1-201ENST00000445995 2473 ntBASIC18.07■□□□□ 0.48
LSM6P62312 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM6P62312 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM6P62312 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM6P62312 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms