Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC008175.2-201ENST00000612840 297 ntBASIC19.98■□□□□ 0.79
FOXA1P55317 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.98■□□□□ 0.79
FOXA1P55317 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.98■□□□□ 0.79
FOXA1P55317 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
FOXA1P55317 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
FOXA1P55317 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
FOXA1P55317 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
FOXA1P55317 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXA1P55317 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXA1P55317 POU5F1P4-201ENST00000413175 1085 ntBASIC19.97■□□□□ 0.79
FOXA1P55317 AC105265.2-201ENST00000467189 838 ntBASIC19.97■□□□□ 0.79
FOXA1P55317 AC005837.3-201ENST00000612163 286 ntBASIC19.97■□□□□ 0.79
FOXA1P55317 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXA1P55317 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
FOXA1P55317 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
FOXA1P55317 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
FOXA1P55317 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.97■□□□□ 0.79
FOXA1P55317 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.97■□□□□ 0.79
FOXA1P55317 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.97■□□□□ 0.79
FOXA1P55317 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXA1P55317 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXA1P55317 IRS3P-201ENST00000223076 1006 ntBASIC19.96■□□□□ 0.79
FOXA1P55317 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXA1P55317 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 AC138907.5-202ENST00000569484 235 ntBASIC19.96■□□□□ 0.79
FOXA1P55317 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.96■□□□□ 0.79
FOXA1P55317 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA1P55317 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.95■□□□□ 0.78
FOXA1P55317 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA1P55317 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA1P55317 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXA1P55317 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXA1P55317 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA1P55317 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA1P55317 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
FOXA1P55317 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
FOXA1P55317 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
FOXA1P55317 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA1P55317 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXA1P55317 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA1P55317 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA1P55317 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
FOXA1P55317 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
FOXA1P55317 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.95■□□□□ 0.78
FOXA1P55317 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
FOXA1P55317 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.94■□□□□ 0.78
FOXA1P55317 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
FOXA1P55317 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.94■□□□□ 0.78
FOXA1P55317 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.94■□□□□ 0.78
FOXA1P55317 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.94■□□□□ 0.78
FOXA1P55317 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
FOXA1P55317 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 AC027612.3-201ENST00000413684 1047 ntBASIC19.94■□□□□ 0.78
FOXA1P55317 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.94■□□□□ 0.78
FOXA1P55317 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.94■□□□□ 0.78
FOXA1P55317 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
FOXA1P55317 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
FOXA1P55317 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
FOXA1P55317 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.93■□□□□ 0.78
FOXA1P55317 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.93■□□□□ 0.78
FOXA1P55317 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
FOXA1P55317 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
FOXA1P55317 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 AC099778.1-201ENST00000568593 1911 ntBASIC19.93■□□□□ 0.78
FOXA1P55317 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
FOXA1P55317 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
FOXA1P55317 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
FOXA1P55317 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms